Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0030816

Physical Location & Seq

Genomic Coordinates Forward (+)

21036883 .. 21038372

Gene Structure 1490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017772

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGAAGAAGACATTCGAAGCTTCGTCGCCACAGTTTCTCATCCCCATCAACATCTGTGCCCATATTGAGTCTCCCCAAACTCAATGGCACCAGTGCACTTGATTCTTCCTACATACTAGACCTCACTGATCTCTCTGCTTACGAAGCTTGCGTGGCCGCCAGCTTCAAGGTTCAGCAACAGTTGATCGCCGTTGATGGTAACTCTTCTCACTCTAGAGATTGTTGGTACTTTACAATTCGATATGCCGCTGGTATCATCAATGAGTTTGGACCTGAGAGCAATGGTGCTATGTCTTGTATTTTTGGTCAACACACTCTTAGACTCTCCCACAGCCGCTTCCAGCCTTCCAGCCACTACTCCTTCAACCGCTTAGTCCCTCCAGTCCGCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.59

Weight (kDa)

9.45

Isoelectric Point (pI)

64.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030816)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017772
rosa_samantha	Rh2BG226100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	5 cut(s)	159, 249, 337, 370, 388
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	169, 367
AluBI	AGCT	3 cut(s)	22, 149, 165
AluI	AGCT	3 cut(s)	22, 149, 165
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	77
Alw44I	GTGCAC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	156
ApaLI	GTGCAC	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	272
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	272
BaeGI	GKGCMC	2 cut(s)	63, 100
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	100
BccI	CCATC	2 cut(s)	55, 191
BceAI	ACGGC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	119, 216
BisI	GCNGC	3 cut(s)	159, 249, 337
BlsI	GCNGC	3 cut(s)	160, 250, 338
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	93, 383
Bse3DI	GCAATG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	93, 383
BseSI	GKGCMC	2 cut(s)	63, 100
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	158
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	63, 100
Bsp143I	GATC	2 cut(s)	130, 186
BspACI	CCGC	5 cut(s)	159, 249, 337, 370, 388
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	93, 383
BssMI	GATC	2 cut(s)	130, 186
Bst4CI	ACNGT	2 cut(s)	35, 183
Bst6I	CTCTTC	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	151, 163
BstDEI	CTNAG	3 cut(s)	276, 320, 373
BstF5I	GGATG	1 cut(s)	41
BstKTI	GATC	2 cut(s)	133, 189
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	130, 186
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 155
BstSLI	GKGCMC	2 cut(s)	63, 100
BstV2I	GAAGAC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	3 cut(s)	100, 126, 391
Cac8I	GCNNGC	2 cut(s)	151, 163
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	229
CviJI	RGCY	7 cut(s)	22, 149, 158, 165, 336, 346, 354
CviKI_1	RGCY	7 cut(s)	22, 149, 158, 165, 336, 346, 354
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	3 cut(s)	276, 320, 373
DpnI	GATC	2 cut(s)	132, 188
DpnII	GATC	2 cut(s)	130, 186
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
EciI	GGCGGA	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	272
FaiI	YATR	4 cut(s)	65, 116, 246, 293
FaqI	GGGAC	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	159, 249, 337
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	3 cut(s)	159, 249, 337
FspBI	CTAG	2 cut(s)	119, 216
GluI	GCNGC	3 cut(s)	159, 249, 337
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HindIII	AAGCTT	2 cut(s)	20, 147
HinfI	GANTC	3 cut(s)	70, 104, 324
Hpy166II	GTNNAC	2 cut(s)	98, 311
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	2 cut(s)	98, 311
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	357, 373
HpyCH4III	ACNGT	2 cut(s)	35, 183
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 155
HpyF3I	CTNAG	3 cut(s)	276, 320, 373
Kzo9I	GATC	2 cut(s)	130, 186
LpnPI	CCDG	6 cut(s)	106, 175, 237, 288, 356, 364
MaeI	CTAG	2 cut(s)	119, 216
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	132, 188
MboI	GATC	2 cut(s)	130, 186
MboII	GAAGA	4 cut(s)	18, 21, 99, 198
MhlI	GDGCHC	2 cut(s)	63, 100
MluCI	AATT	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	79, 318
MnlI	CCTC	2 cut(s)	134, 390
MroXI	GAANNNNTTC	1 cut(s)	13
MspA1I	CMGCKG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	146, 155
NdeII	GATC	2 cut(s)	130, 186
NlaIV	GGNNCC	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	160, 250, 338
PleI	GAGTC	2 cut(s)	78, 318
PpsI	GAGTC	2 cut(s)	78, 318
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SatI	GCNGC	3 cut(s)	159, 249, 337
Sau3AI	GATC	2 cut(s)	130, 186
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	79, 318
SduI	GDGCHC	2 cut(s)	63, 100
SetI	ASST	6 cut(s)	24, 126, 151, 167, 174, 277
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	5 cut(s)	159, 249, 337, 370, 388
SspMI	CTAG	2 cut(s)	119, 216
TaaI	ACNGT	2 cut(s)	35, 183
TaqI	TCGA	2 cut(s)	17, 241
TasI	AATT	1 cut(s)	237
TauI	GCSGC	3 cut(s)	161, 251, 339
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	2 cut(s)	100, 133
TspRI	CASTG	2 cut(s)	100, 133
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	272
XbaI	TCTAGA	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	13
XspI	CTAG	2 cut(s)	119, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.