Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0030772

Physical Location & Seq

Genomic Coordinates Forward (+)

23593190 .. 23596258

Gene Structure 3069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017955

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTGTGCCGACGGCAAATAGGGATGGCGAGAGTCAGAGGAGTCCAGAGGCGAAGGTGGGGAAGCATGTAGAGGATCTGTGGGACATACAAGAGCCGCAGCTATCTCCCACTGAAAAGCTCAATGCTTGCTTTGAGAGCGTTCCGGTTTCTGACTTCCCTTCTGCTCCTTCTAATCAAGTGGCAGCGGCGGTGGGTGTCGACAGTCGAATCTTAGAGGAGACAGCGGGGACTTTGAGTTCAGGTCAAGTCGGGAGTTTCTTCCCAGACCACGAAGATGGGGAAGAGCTGAGAGTCGGCGGAGCAAGCGACGGCCTCGAGCTCTTCCTCGTCGATCGGCTCCTCCTCCTCAGAATTGGATCGAGCTTCGTCGGAAGAGAGCTCGGGCTTCCTTTTGGTGGTCAGTATACTACTGACCCTCAGCGGTTCCTCTTTGCCGCTAGCTTCGCCGCCTGGATTCACCAGAGGATTTTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030312 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

160

Amino Acids

17.17

Weight (kDa)

4.56

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030772)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017955
rosa_multiflora	Rmu_ssc0000038.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	201, 407
AciI	CCGC	8 cut(s)	98, 188, 191, 227, 300, 424, 438, 450
AclWI	GGATC	2 cut(s)	84, 367
AfiI	CCNNNNNNNGG	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	452
AloI	GAACNNNNNNTCC	2 cut(s)	223, 255
AluBI	AGCT	7 cut(s)	103, 121, 289, 322, 366, 382, 444
AluI	AGCT	7 cut(s)	103, 121, 289, 322, 366, 382, 444
Alw21I	GWGCWC	2 cut(s)	324, 384
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	84, 367
Ama87I	CYCGRG	2 cut(s)	317, 383
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	100, 185
AsuHPI	GGTGA	1 cut(s)	452
AsuNHI	GCTAGC	1 cut(s)	440
AvaI	CYCGRG	2 cut(s)	317, 383
BanII	GRGCYC	2 cut(s)	324, 384
Bbv12I	GWGCWC	2 cut(s)	324, 384
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	112, 197
BccI	CCATC	2 cut(s)	20, 272
BceAI	ACGGC	2 cut(s)	30, 328
BciT130I	CCWGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	441
BisI	GCNGC	6 cut(s)	98, 101, 186, 189, 438, 450
BlsI	GCNGC	6 cut(s)	99, 102, 187, 190, 439, 451
Bme1390I	CCNGG	1 cut(s)	454
BmeT110I	CYCGRG	2 cut(s)	317, 383
BmiI	GGNNCC	2 cut(s)	341, 428
BmrFI	CCNGG	1 cut(s)	454
BmtI	GCTAGC	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	454
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMII	CTCAG	3 cut(s)	281, 364, 434
BseRI	GAGGAG	5 cut(s)	55, 233, 332, 335, 338
BseXI	GCAGC	2 cut(s)	112, 197
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	337
BsiHKAI	GWGCWC	2 cut(s)	324, 384
BsiHKCI	CYCGRG	2 cut(s)	317, 383
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	2 cut(s)	98, 244
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	98, 244
BsnI	GGCC	1 cut(s)	315
BsoBI	CYCGRG	2 cut(s)	317, 383
Bsp1286I	GDGCHC	2 cut(s)	324, 384
Bsp143I	GATC	3 cut(s)	76, 334, 359
BspACI	CCGC	8 cut(s)	98, 188, 191, 227, 300, 424, 438, 450
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	3 cut(s)	282, 363, 433
BspLI	GGNNCC	2 cut(s)	341, 428
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	84, 367
BspQI	GCTCTTC	2 cut(s)	279, 329
BssMI	GATC	3 cut(s)	76, 334, 359
BssNAI	GTATAC	1 cut(s)	408
Bst1107I	GTATAC	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	3 cut(s)	279, 329, 370
BstC8I	GCNNGC	3 cut(s)	130, 307, 442
BstDEI	CTNAG	4 cut(s)	214, 290, 350, 420
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	3 cut(s)	79, 337, 362
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	76, 334, 359
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 306, 446
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	452
BstV1I	GCAGC	2 cut(s)	112, 197
BstX2I	RGATCY	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	76
BstZ17I	GTATAC	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	130, 307, 442
CviAII	CATG	1 cut(s)	68
DdeI	CTNAG	4 cut(s)	214, 290, 350, 420
DpnI	GATC	3 cut(s)	78, 336, 361
DpnII	GATC	3 cut(s)	76, 334, 359
Eam1104I	CTCTTC	3 cut(s)	279, 329, 370
EarI	CTCTTC	3 cut(s)	279, 329, 370
EciI	GGCGGA	1 cut(s)	315
Ecl136II	GAGCTC	2 cut(s)	322, 382
Eco24I	GRGCYC	2 cut(s)	324, 384
Eco53kI	GAGCTC	2 cut(s)	322, 382
Eco88I	CYCGRG	2 cut(s)	317, 383
EcoICRI	GAGCTC	2 cut(s)	322, 382
EcoRII	CCWGG	1 cut(s)	452
EcoT38I	GRGCYC	2 cut(s)	324, 384
FaeI	CATG	1 cut(s)	71
FaiI	YATR	3 cut(s)	69, 89, 408
FaqI	GGGAC	2 cut(s)	98, 244
FatI	CATG	1 cut(s)	67
FauI	CCCGC	1 cut(s)	220
FblI	GTMKAC	2 cut(s)	201, 407
Fnu4HI	GCNGC	6 cut(s)	98, 101, 186, 189, 438, 450
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	2 cut(s)	324, 384
Fsp4HI	GCNGC	6 cut(s)	98, 101, 186, 189, 438, 450
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	6 cut(s)	98, 101, 186, 189, 438, 450
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	5 cut(s)	34, 43, 210, 294, 457
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	2 cut(s)	202, 408
Hpy188I	TCNGA	4 cut(s)	39, 154, 353, 374
Hpy188III	TCNNGA	2 cut(s)	47, 253
Hpy8I	GTNNAC	2 cut(s)	202, 408
Hpy99I	CGWCG	4 cut(s)	16, 314, 335, 374
HpyAV	CCTTC	3 cut(s)	49, 171, 180
HpyCH4III	ACNGT	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 306, 446
HpyF3I	CTNAG	4 cut(s)	214, 290, 350, 420
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	76, 334, 359
LguI	GCTCTTC	2 cut(s)	279, 329
LmnI	GCTCC	3 cut(s)	172, 302, 345
LpnPI	CCDG	7 cut(s)	60, 159, 228, 279, 439, 466, 476
Lsp1109I	GCAGC	2 cut(s)	112, 197
MaeI	CTAG	1 cut(s)	441
MalI	GATC	3 cut(s)	78, 336, 361
MboI	GATC	3 cut(s)	76, 334, 359
MboII	GAAGA	5 cut(s)	253, 287, 296, 316, 387
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	2 cut(s)	324, 384
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	3 cut(s)	43, 52, 303
MmeI	TCCRAC	1 cut(s)	352
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	3 cut(s)	188, 227, 424
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	3 cut(s)	138, 306, 446
NdeII	GATC	3 cut(s)	76, 334, 359
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	2 cut(s)	341, 428
NspI	RCATGY	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	317
PciSI	GCTCTTC	2 cut(s)	279, 329
PfeI	GAWTC	2 cut(s)	210, 457
PkrI	GCNGC	6 cut(s)	99, 102, 187, 190, 439, 451
Ple19I	CGATCG	1 cut(s)	337
PleI	GAGTC	3 cut(s)	42, 51, 302
PpsI	GAGTC	3 cut(s)	42, 51, 302
Psp124BI	GAGCTC	2 cut(s)	324, 384
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	341, 428
PspXI	VCTCGAGB	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	276
SacI	GAGCTC	2 cut(s)	324, 384
SalI	GTCGAC	1 cut(s)	200
SapI	GCTCTTC	2 cut(s)	279, 329
SatI	GCNGC	6 cut(s)	98, 101, 186, 189, 438, 450
Sau3AI	GATC	3 cut(s)	76, 334, 359
SchI	GAGTC	3 cut(s)	43, 52, 303
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	2 cut(s)	324, 384
SetI	ASST	9 cut(s)	60, 105, 123, 247, 291, 324, 368, 384, 446
Sfr274I	CTCGAG	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	8 cut(s)	98, 188, 191, 227, 300, 424, 438, 450
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	2 cut(s)	324, 384
StyD4I	CCNGG	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	5 cut(s)	201, 208, 318, 333, 362
TasI	AATT	1 cut(s)	354
TauI	GCSGC	4 cut(s)	100, 191, 440, 452
TfiI	GAWTC	2 cut(s)	210, 457
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	2 cut(s)	100, 185
TspRI	CASTG	1 cut(s)	118
XceI	RCATGY	1 cut(s)	71
XhoI	CTCGAG	1 cut(s)	317
XmiI	GTMKAC	2 cut(s)	201, 407
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.