Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000038.1

Orthogroup ID

OG0030772

Physical Location & Seq

Genomic Coordinates Forward (+)

28659 .. 29641

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000038.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgggtgtgccggcggcgaatagggacggcgagagtccgaggagtccagaggcgaagctggggatgcatgtagaggatctgtgggacatacaagagccgcagctatctcccaccgaaaagctcaatgcttgctttgagagtgttccggtttccgacttccctactgctccttccactcaagtgattgagataaagtcagacaccaaactaccagtcgtcgttactgctttgatcggcctcgtcgacgatgaaaaaccaccagctgccatcgttttgtggaacgcaatccggcgaaggacctcaacttcgttttgcagaaccaccagcctccatcgtttcatcctcaagctccggcaacagcagatttgcttcggtgaccggccagagtcgaatccaaggatggtcataggttcccaggtagaagttctttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030312 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

144

Amino Acids

15.95

Weight (kDa)

5.69

Isoelectric Point (pI)

71.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030772)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017955
rosa_multiflora	Rmu_ssc0000038.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AciI	CCGC	2 cut(s)	14, 98
AclWI	GGATC	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	414
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	5 cut(s)	58, 103, 121, 263, 349
AluI	AGCT	5 cut(s)	58, 103, 121, 263, 349
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	2 cut(s)	235, 380
ApeKI	GCWGC	2 cut(s)	100, 263
ArsI	GACNNNNNNTTYG	4 cut(s)	198, 230, 289, 321
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	112, 250
BccI	CCATC	3 cut(s)	275, 339, 394
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	416
BisI	GCNGC	4 cut(s)	15, 98, 101, 264
BlsI	GCNGC	4 cut(s)	16, 99, 102, 265
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	54
BpuEI	CTTGAG	2 cut(s)	162, 329
BsaJI	CCNNGG	3 cut(s)	38, 395, 414
BsaWI	WCCGGW	1 cut(s)	145
Bse118I	RCCGGY	2 cut(s)	10, 378
Bse1I	ACTGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	3 cut(s)	38, 395, 414
BseGI	GGATG	3 cut(s)	69, 339, 405
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	112, 250
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	237, 382
BsiSI	CCGG	5 cut(s)	11, 146, 289, 352, 379
BslFI	GGGAC	2 cut(s)	38, 98
BsmFI	GGGAC	2 cut(s)	38, 98
BsnI	GGCC	2 cut(s)	237, 382
Bsp143I	GATC	2 cut(s)	76, 231
BspACI	CCGC	2 cut(s)	14, 98
BspANI	GGCC	2 cut(s)	237, 382
BspLI	GGNNCC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	84
BsrFI	RCCGGY	2 cut(s)	10, 378
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	2 cut(s)	10, 378
BssECI	CCNNGG	3 cut(s)	38, 395, 414
BssMI	GATC	2 cut(s)	76, 231
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	12, 130
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	3 cut(s)	69, 339, 405
BstKTI	GATC	2 cut(s)	79, 234
BstMBI	GATC	2 cut(s)	76, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	71
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	112, 250
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	237, 382
BtsCI	GGATG	3 cut(s)	69, 339, 405
Cac8I	GCNNGC	2 cut(s)	12, 130
Cfr10I	RCCGGY	2 cut(s)	10, 378
Cfr13I	GGNCC	1 cut(s)	297
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	9 cut(s)	58, 97, 103, 121, 237, 263, 327, 349, 382
CviKI_1	RGCY	9 cut(s)	58, 97, 103, 121, 237, 263, 327, 349, 382
DpnI	GATC	2 cut(s)	78, 233
DpnII	GATC	2 cut(s)	76, 231
EaeI	YGGCCR	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	395
EcoT22I	ATGCAT	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	1 cut(s)	71
FaiI	YATR	3 cut(s)	69, 89, 407
FaqI	GGGAC	2 cut(s)	38, 98
FatI	CATG	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	4 cut(s)	15, 98, 101, 264
FokI	GGATG	3 cut(s)	76, 326, 412
Fsp4HI	GCNGC	4 cut(s)	15, 98, 101, 264
GluI	GCNGC	4 cut(s)	15, 98, 101, 264
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	237, 382
HapII	CCGG	5 cut(s)	11, 146, 289, 352, 379
Hin1II	CATG	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	4 cut(s)	34, 43, 386, 391
HpaII	CCGG	5 cut(s)	11, 146, 289, 352, 379
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	39, 154, 199
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	3 cut(s)	221, 245, 248
HpyAV	CCTTC	2 cut(s)	180, 288
HpyCH4V	TGCA	2 cut(s)	67, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	76, 231
LmnI	GCTCC	2 cut(s)	172, 354
Lsp1109I	GCAGC	2 cut(s)	112, 250
LweI	GCATC	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	220, 374
MalI	GATC	2 cut(s)	78, 233
MboI	GATC	2 cut(s)	76, 231
MflI	RGATCY	1 cut(s)	76
MlyI	GAGTC	3 cut(s)	43, 52, 395
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	7 cut(s)	33, 43, 67, 248, 310, 338, 353
Mph1103I	ATGCAT	1 cut(s)	69
MroNI	GCCGGC	1 cut(s)	10
MseI	TTAA	1 cut(s)	433
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	5 cut(s)	11, 146, 289, 352, 379
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	64
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	2 cut(s)	76, 231
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	69
NspI	RCATGY	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	4 cut(s)	16, 99, 102, 265
PleI	GAGTC	3 cut(s)	42, 51, 394
PpsI	GAGTC	3 cut(s)	42, 51, 394
PpuMI	RGGWCCY	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	414
PspEI	GGTNACC	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	297
PspPPI	RGGWCCY	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	433
SatI	GCNGC	4 cut(s)	15, 98, 101, 264
Sau3AI	GATC	2 cut(s)	76, 231
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	3 cut(s)	43, 52, 395
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	8 cut(s)	60, 105, 123, 265, 302, 351, 412, 420
SfaNI	GCATC	1 cut(s)	54
SgrDI	CGTCGACG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	177, 344
SmoI	CTYRAG	2 cut(s)	177, 344
SsiI	CCGC	2 cut(s)	14, 98
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	395
TaqI	TCGA	2 cut(s)	243, 389
TauI	GCSGC	2 cut(s)	17, 100
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	433
Tru9I	TTAA	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	100, 263
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	264, 328
VpaK11BI	GGWCC	1 cut(s)	297
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.