RLG00000018428

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0030709
Physical Location & Seq
Forward (+)
29661214 .. 29661867
654 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018428

Sequence Viewer

Length: 516 bp
ATGGAAAATCGTTACGAGTTTTCTCAATGGAAGGGCATCGACAGCTTCAGAGCATGGATAAGAGAATCTGATCCAAAGCAGCTAGTCTTCATCAAGGGGACCTCGCTTGAAAGAGCAGATGCGGATTTCTTCAATGCCCGCGGTTCCAGGGTTGCAGCATCTTTGGGTATGGTTGATAATCTTCTTCCTCGAATTGTTTCAGGCGAATCAAGTAATGGTTCTTACTATTACTTAGTATTTCCTTATATCCCACTCAACCTAGTGACAGACCCACAGAATGTGAGAGCCATTGTTGATGGGTACCAATCTTCTCGCCCTAAGGGTTGTCTTGAACATAAACTCTCCCCTCTCAAATGTCTTGGGATATTGAGATTCAAAGCTCCAGAGCTTTTGCTTGGGCAAAAGGATCCAAATGACCTTGCAATGGTTAACGAAGAAATGTTTGTGGGTTCAGGGGAAGAAGAGGTCGTGGCTTCGGAAGTAGTGGACTCAGGCTCTGACTCTGATGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.06

Weight (kDa)

4.69

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030709)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014329 RLG00000018428

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 300
AccII CGCG 1 cut(s) 141
AciI CCGC 3 cut(s) 122, 139, 141
AclWI GGATC 3 cut(s) 65, 401, 414
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 4 cut(s) 110, 133, 332, 376
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 4 cut(s) 45, 82, 380, 388
AluI AGCT 4 cut(s) 45, 82, 380, 388
AlwI GGATC 3 cut(s) 65, 401, 414
AlwNI CAGNNNCTG 1 cut(s) 497
ApeKI GCWGC 2 cut(s) 79, 155
Asp700I GAANNNNTTC 1 cut(s) 196
Asp718I GGTACC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 99
AvaII GGWCC 1 cut(s) 99
AxyI CCTNAGG 1 cut(s) 318
BamHI GGATCC 1 cut(s) 406
BanI GGYRCC 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 91, 167
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 148
BfaI CTAG 2 cut(s) 83, 260
BisI GCNGC 2 cut(s) 80, 156
BlsI GCNGC 2 cut(s) 81, 157
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 4 cut(s) 100, 145, 302, 408
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 3 cut(s) 45, 109, 167
BpiI GAAGAC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 139, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse21I CCTNAGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 139, 147
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 504
BseXI GCAGC 2 cut(s) 91, 167
Bsh1236I CGCG 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 300
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 112
Bsp143I GATC 2 cut(s) 70, 406
BspACI CCGC 3 cut(s) 122, 139, 141
BspCNI CTCAG 1 cut(s) 503
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 4 cut(s) 100, 145, 302, 408
BspPI GGATC 3 cut(s) 65, 401, 414
BspT107I GGYRCC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 429
BssECI CCNNGG 2 cut(s) 139, 147
BssMI GATC 2 cut(s) 70, 406
Bst2UI CCWGG 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 456
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 3 cut(s) 232, 318, 490
BstDSI CCRYGG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 2 cut(s) 73, 409
BstMBI GATC 2 cut(s) 70, 406
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 91, 167
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
Bsu36I CCTNAGG 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 139
CaiI CAGNNNCTG 1 cut(s) 497
Cfr13I GGNCC 1 cut(s) 99
Cfr42I CCGCGG 1 cut(s) 142
Csp6I GTAC 1 cut(s) 301
CviAII CATG 1 cut(s) 54
CviJI RGCY 7 cut(s) 45, 82, 287, 380, 388, 473, 495
CviKI_1 RGCY 7 cut(s) 45, 82, 287, 380, 388, 473, 495
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 3 cut(s) 232, 318, 490
DpnI GATC 2 cut(s) 72, 408
DpnII GATC 2 cut(s) 70, 406
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 31
Eco81I CCTNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 146
FaeI CATG 1 cut(s) 57
FaiI YATR 4 cut(s) 55, 170, 246, 336
FaqI GGGAC 1 cut(s) 112
FatI CATG 1 cut(s) 53
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 80, 156
Fsp4HI GCNGC 2 cut(s) 80, 156
FspBI CTAG 2 cut(s) 83, 260
GluI GCNGC 2 cut(s) 80, 156
GsuI CTGGAG 1 cut(s) 366
Hin1II CATG 1 cut(s) 57
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 5 cut(s) 65, 206, 372, 488, 500
HpaI GTTAAC 1 cut(s) 430
Hpy166II GTNNAC 2 cut(s) 430, 487
Hpy188I TCNGA 5 cut(s) 50, 70, 478, 499, 505
Hpy188III TCNNGA 2 cut(s) 329, 383
Hpy8I GTNNAC 2 cut(s) 430, 487
HpyAV CCTTC 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 155, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 3 cut(s) 232, 318, 490
Hsp92II CATG 1 cut(s) 57
KpnI GGTACC 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 430
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 2 cut(s) 70, 406
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 6 cut(s) 133, 160, 186, 396, 438, 477
Lsp1109I GCAGC 2 cut(s) 91, 167
LweI GCATC 3 cut(s) 45, 109, 167
MaeI CTAG 2 cut(s) 83, 260
MaeIII GTNAC 2 cut(s) 11, 262
MalI GATC 2 cut(s) 72, 408
MboI GATC 2 cut(s) 70, 406
MboII GAAGA 8 cut(s) 79, 121, 173, 176, 300, 446, 470, 473
MflI RGATCY 1 cut(s) 406
MluCI AATT 1 cut(s) 192
MlyI GAGTC 2 cut(s) 482, 494
MnlI CCTC 4 cut(s) 112, 198, 357, 457
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 2 cut(s) 70, 406
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 4 cut(s) 100, 145, 302, 408
NmuCI GTSAC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 3 cut(s) 65, 206, 372
PkrI GCNGC 2 cut(s) 81, 157
PleI GAGTC 2 cut(s) 482, 494
PpsI GAGTC 2 cut(s) 482, 494
PpuMI RGGWCCY 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 4 cut(s) 100, 145, 302, 408
PspPI GGNCC 1 cut(s) 99
PspPPI RGGWCCY 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SacII CCGCGG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 2 cut(s) 80, 156
Sau3AI GATC 2 cut(s) 70, 406
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 2 cut(s) 482, 494
ScrFI CCNGG 1 cut(s) 148
SetI ASST 8 cut(s) 47, 84, 104, 261, 382, 390, 420, 468
SfaNI GCATC 3 cut(s) 45, 109, 167
Sfr303I CCGCGG 1 cut(s) 142
SgrBI CCGCGG 1 cut(s) 142
SinI GGWCC 1 cut(s) 99
Sse9I AATT 1 cut(s) 192
SsiI CCGC 3 cut(s) 122, 139, 141
SspMI CTAG 2 cut(s) 83, 260
StyD4I CCNGG 1 cut(s) 146
TaqI TCGA 2 cut(s) 39, 190
TasI AATT 1 cut(s) 192
TfiI GAWTC 3 cut(s) 65, 206, 372
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 79, 155
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 2 cut(s) 83, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.