RLG00000018983

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0030771
Physical Location & Seq
Reverse (-)
44021134 .. 44021903
770 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018983

Sequence Viewer

Length: 681 bp
ATGGGAGTATTACTGCTATGGAAGCTAAGCAAGTTGCTGTGTCCCAGTATCAGCGAGTTCAATTCCATGTTCAAGATGCAGTACTCGACCAAAGCCGGCGATAGCGGCTGTGTGAATTTTAGGGCGCGCAGCCGTACTGTGATCGAGGACATGCCGTTGAATATCTATGCACCATGGCGGGGGAGGCCGTGCTTAGTAGGCGACCAGTGGCATAATTCGAATATGGTGCACCGGGCCCCGAGCTGGTTCCAACCCATCTGTGAGTATCGTGATTGCCTTTATTGGTGGATTTTGTTGTCTTTGGTGTGTAGAAATAGCGTTTTTGTGCATCGTAGTAAGGCAGGAGGTGGAGTTGACCACGCTAGTGCGGAAGCGTGTGGCGAGGGTGATGTGTGCCTTTCCCAAGGGGGCGAGGGGGTCTATCATCTGTGTAGGCTCCCGATATACGAGAGATTTGATTTGGGAGATTTCCGGGTGAAGGATTTTCTGTTTGTGTTGCGTGGTGTGGTGTGGTGTGTTGTGTTGTGTGTTATCCTTGCTGACATTGGATTGTTGCGAGAATCGCAGCCGGCGAGGAGAGTGGATGTTGACCTGCCGGATAAAGTGTGTGTGATTGATCATCGGGTTAGCATGTCACTGCCCGATGAGATGTATCTGAGGTTTCCCAATGCCGTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.74

Weight (kDa)

7.51

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030771)

Species Orthologous Gene IDs
rosa_laevigata RLG00000018983
rosa_roxburghii Rroxscaffold_6G00393020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 600
AccII CGCG 1 cut(s) 127
AciI CCGC 3 cut(s) 105, 178, 368
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 2 cut(s) 83, 136
AfiI CCNNNNNNNGG 3 cut(s) 179, 243, 478
AgsI TTSAA 3 cut(s) 61, 73, 160
AleI CACNNNNGTG 1 cut(s) 363
AluBI AGCT 2 cut(s) 25, 243
AluI AGCT 2 cut(s) 25, 243
Alw21I GWGCWC 1 cut(s) 231
Alw44I GTGCAC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 238
AoxI GGCC 2 cut(s) 185, 234
ApaI GGGCCC 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 129, 565
ApoI RAATTY 1 cut(s) 115
AspLEI GCGC 2 cut(s) 127, 129
AspS9I GGNCC 2 cut(s) 234, 235
AsuC2I CCSGG 2 cut(s) 233, 473
AsuHPI GGTGA 2 cut(s) 398, 487
AsuII TTCGAA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 238
BaeGI GKGCMC 2 cut(s) 231, 238
BanII GRGCYC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 141, 577
BccI CCATC 1 cut(s) 263
BceAI ACGGC 4 cut(s) 117, 139, 172, 656
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 2 cut(s) 233, 473
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 677
BfuAI ACCTGC 1 cut(s) 600
BisI GCNGC 3 cut(s) 106, 130, 566
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 3 cut(s) 107, 131, 567
BmcAI AGTACT 1 cut(s) 83
Bme1390I CCNGG 2 cut(s) 233, 473
BmeT110I CYCGRG 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 234, 235
BmiI GGNNCC 4 cut(s) 236, 237, 248, 437
BmrFI CCNGG 2 cut(s) 233, 473
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 2 cut(s) 66, 337
BmuI ACTGGG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 218
BpuMI CCSGG 2 cut(s) 233, 473
BsaJI CCNNGG 2 cut(s) 173, 403
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 243, 478
Bse118I RCCGGY 2 cut(s) 95, 568
Bse1I ACTGG 2 cut(s) 45, 205
BseDI CCNNGG 2 cut(s) 173, 403
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 3 cut(s) 179, 243, 478
BseMII CTCAG 1 cut(s) 647
BseNI ACTGG 2 cut(s) 45, 205
BsePI GCGCGC 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 589
BseSI GKGCMC 2 cut(s) 231, 238
BseXI GCAGC 2 cut(s) 141, 577
Bsh1236I CGCG 1 cut(s) 127
BshFI GGCC 2 cut(s) 187, 236
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 238
BsiSI CCGG 5 cut(s) 96, 232, 472, 569, 596
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 3 cut(s) 179, 243, 478
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 2 cut(s) 187, 236
BsoBI CYCGRG 1 cut(s) 238
Bsp119I TTCGAA 1 cut(s) 218
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 231, 238
Bsp143I GATC 2 cut(s) 141, 616
Bsp1720I GCTNAGC 1 cut(s) 26
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 3 cut(s) 105, 178, 368
BspANI GGCC 2 cut(s) 187, 236
BspCNI CTCAG 1 cut(s) 648
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 4 cut(s) 236, 237, 248, 437
BspMI ACCTGC 1 cut(s) 600
BspT104I TTCGAA 1 cut(s) 218
BsrFI RCCGGY 2 cut(s) 95, 568
BsrI ACTGG 2 cut(s) 45, 205
BssAI RCCGGY 2 cut(s) 95, 568
BssECI CCNNGG 2 cut(s) 173, 403
BssHII GCGCGC 1 cut(s) 125
BssMI GATC 2 cut(s) 141, 616
BssT1I CCWWGG 2 cut(s) 173, 403
Bst4CI ACNGT 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 97, 127, 570
BstDEI CTNAG 3 cut(s) 26, 193, 656
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 1 cut(s) 127
BstHHI GCGC 2 cut(s) 127, 129
BstKTI GATC 2 cut(s) 144, 619
BstMBI GATC 2 cut(s) 141, 616
BstMWI GCNNNNNNNGC 5 cut(s) 22, 105, 184, 198, 562
BstNSI RCATGY 2 cut(s) 154, 634
BstSCI CCNGG 2 cut(s) 231, 471
BstSFI CTRYAG 1 cut(s) 677
BstSLI GKGCMC 2 cut(s) 231, 238
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 141, 577
BsuRI GGCC 2 cut(s) 187, 236
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 2 cut(s) 212, 635
BveI ACCTGC 1 cut(s) 600
Cac8I GCNNGC 3 cut(s) 97, 127, 570
CfoI GCGC 2 cut(s) 127, 129
Cfr10I RCCGGY 2 cut(s) 95, 568
Cfr13I GGNCC 2 cut(s) 234, 235
Csp6I GTAC 2 cut(s) 82, 135
CviAII CATG 4 cut(s) 67, 151, 174, 631
CviJI RGCY 9 cut(s) 25, 95, 108, 132, 187, 236, 243, 436, 568
CviKI_1 RGCY 9 cut(s) 25, 95, 108, 132, 187, 236, 243, 436, 568
CviQI GTAC 2 cut(s) 82, 135
DdeI CTNAG 3 cut(s) 26, 193, 656
DpnI GATC 2 cut(s) 143, 618
DpnII GATC 2 cut(s) 141, 616
Eco130I CCWWGG 2 cut(s) 173, 403
Eco24I GRGCYC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 235
EcoT14I CCWWGG 2 cut(s) 173, 403
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 173, 403
FaeI CATG 4 cut(s) 70, 154, 177, 634
FaiI YATR 9 cut(s) 19, 68, 152, 168, 175, 213, 224, 445, 632
FaqI GGGAC 1 cut(s) 27
FatI CATG 4 cut(s) 66, 150, 173, 630
FauI CCCGC 1 cut(s) 171
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 3 cut(s) 106, 130, 566
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 3 cut(s) 106, 130, 566
FspBI CTAG 1 cut(s) 363
GlaI GCGC 2 cut(s) 126, 128
GluI GCNGC 3 cut(s) 106, 130, 566
HaeIII GGCC 2 cut(s) 187, 236
HapII CCGG 5 cut(s) 96, 232, 472, 569, 596
HhaI GCGC 2 cut(s) 127, 129
Hin1II CATG 4 cut(s) 70, 154, 177, 634
Hin6I GCGC 2 cut(s) 125, 127
HinP1I GCGC 2 cut(s) 125, 127
HincII GTYRAC 2 cut(s) 355, 589
HindII GTYRAC 2 cut(s) 355, 589
HinfI GANTC 1 cut(s) 560
HpaII CCGG 5 cut(s) 96, 232, 472, 569, 596
HphI GGTGA 2 cut(s) 398, 487
Hpy166II GTNNAC 3 cut(s) 229, 355, 589
Hpy188I TCNGA 1 cut(s) 657
Hpy188III TCNNGA 3 cut(s) 73, 269, 439
Hpy8I GTNNAC 3 cut(s) 229, 355, 589
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 79, 170, 229, 328
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 105, 184, 198, 562
HpyF3I CTNAG 3 cut(s) 26, 193, 656
Hsp92II CATG 4 cut(s) 70, 154, 177, 634
HspAI GCGC 2 cut(s) 125, 127
KroI GCCGGC 2 cut(s) 95, 568
KroNI GCCGGC 2 cut(s) 97, 570
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 2 cut(s) 141, 616
LmnI GCTCC 1 cut(s) 441
Lsp1109I GCAGC 2 cut(s) 141, 577
LweI GCATC 2 cut(s) 66, 337
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 633
MalI GATC 2 cut(s) 143, 618
MboI GATC 2 cut(s) 141, 616
MhlI GDGCHC 2 cut(s) 231, 238
MluCI AATT 3 cut(s) 61, 115, 214
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 7 cut(s) 139, 177, 338, 376, 406, 567, 651
MroNI GCCGGC 2 cut(s) 95, 568
MslI CAYNNNNRTG 1 cut(s) 363
MspI CCGG 5 cut(s) 96, 232, 472, 569, 596
MspR9I CCNGG 2 cut(s) 233, 473
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 5 cut(s) 22, 105, 184, 198, 562
NaeI GCCGGC 2 cut(s) 97, 570
NciI CCSGG 2 cut(s) 233, 473
NcoI CCATGG 1 cut(s) 173
NdeII GATC 2 cut(s) 141, 616
NgoMIV GCCGGC 2 cut(s) 95, 568
NlaIII CATG 4 cut(s) 70, 154, 177, 634
NlaIV GGNNCC 4 cut(s) 236, 237, 248, 437
NmuCI GTSAC 1 cut(s) 633
NspI RCATGY 2 cut(s) 154, 634
NspV TTCGAA 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 363
PauI GCGCGC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 569
PdiI GCCGGC 2 cut(s) 97, 570
PfeI GAWTC 1 cut(s) 560
PkrI GCNGC 3 cut(s) 107, 131, 567
PspN4I GGNNCC 4 cut(s) 236, 237, 248, 437
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 234, 235
PteI GCGCGC 1 cut(s) 125
RsaI GTAC 2 cut(s) 83, 136
RsaNI GTAC 2 cut(s) 82, 135
RseI CAYNNNNRTG 1 cut(s) 363
SatI GCNGC 3 cut(s) 106, 130, 566
Sau3AI GATC 2 cut(s) 141, 616
Sau96I GGNCC 2 cut(s) 234, 235
ScaI AGTACT 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 233, 473
SduI GDGCHC 2 cut(s) 231, 238
SetI ASST 5 cut(s) 27, 245, 349, 594, 662
SfaNI GCATC 2 cut(s) 66, 337
SfcI CTRYAG 1 cut(s) 677
SfuI TTCGAA 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 363
Sse9I AATT 3 cut(s) 61, 115, 214
SsiI CCGC 3 cut(s) 105, 178, 368
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 231, 471
StyI CCWWGG 2 cut(s) 173, 403
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 3 cut(s) 86, 144, 218
TasI AATT 3 cut(s) 61, 115, 214
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 1 cut(s) 560
TscAI CASTG 2 cut(s) 212, 642
TseFI GTSAC 1 cut(s) 633
TseI GCWGC 2 cut(s) 129, 565
Tsp45I GTSAC 1 cut(s) 633
TspRI CASTG 2 cut(s) 212, 642
VneI GTGCAC 1 cut(s) 227
XapI RAATTY 1 cut(s) 115
XceI RCATGY 2 cut(s) 154, 634
XspI CTAG 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.