RLG00000019501

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0021567
Physical Location & Seq
Reverse (-)
52832574 .. 52833173
600 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019501

Sequence Viewer

Length: 525 bp
ATGCGTGAACTTTCAATTGCAAGTATAGAGCCCAACAATAATAGCTGCTGTGGGAGGAATCCAACATCAAGCTGCTGTGGGAGGATCCAAACCCATTCAACTGAATTTTTTCCAAAACCCAATATCGAAGCCCGGAGAATCGTCCCCGAGATCGCGTTCCTCACCTTCTTCAACTCTCTCGGAATCAAGCATTCCGCTCCAGAATCCTCACATCCTCGAAATCCACGAAACCCCATGACTCCTTCACCTACTCCAGAATCCTCAAGCGCTCTTGGCCCGCGACCTCACCTCTCCACTTCTCGCGCACCAACCATCTTCTCAGCTATTTCGACTCCGGCTCTCTCCTCCCCAACTGCATCGTCGTCGCCGGAGTCAGATTTTCGGCAATTTAGAGAGGATGGAGTCGCGGACCGGGAGCTCTATTACTGGCTAGTCTGTGAACTTCATACCTTTGCCGCCGATCAGGGCCGTCCTGACGGAGAAGAGTGCGGAGGTGCACTGGTAGCAGAGTCGAGGAAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

18.93

Weight (kDa)

6.2

Isoelectric Point (pI)

65.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021567)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019501
rosa_multiflora Rmu_sc0004521.1_g000008 Rmu_sc0004521.1_g000009
rosa_roxburghii Rroxscaffold_1G00063390
rosa_samantha Rh5AG102400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 197
AccII CGCG 4 cut(s) 155, 280, 303, 407
AciI CCGC 5 cut(s) 195, 278, 407, 456, 489
AclWI GGATC 2 cut(s) 79, 92
AcsI RAATTY 1 cut(s) 104
AfeI AGCGCT 1 cut(s) 268
AgsI TTSAA 3 cut(s) 15, 99, 172
AluBI AGCT 4 cut(s) 45, 72, 323, 418
AluI AGCT 4 cut(s) 45, 72, 323, 418
Alw21I GWGCWC 2 cut(s) 420, 499
Alw44I GTGCAC 1 cut(s) 495
AlwI GGATC 2 cut(s) 79, 92
Ama87I CYCGRG 1 cut(s) 146
Aor51HI AGCGCT 1 cut(s) 268
AoxI GGCC 2 cut(s) 274, 466
ApaLI GTGCAC 1 cut(s) 495
ApeKI GCWGC 2 cut(s) 45, 72
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 269, 305
AspS9I GGNCC 3 cut(s) 275, 409, 466
AsuC2I CCSGG 2 cut(s) 133, 413
AsuHPI GGTGA 3 cut(s) 154, 237, 278
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 409
BaeGI GKGCMC 1 cut(s) 499
BamHI GGATCC 1 cut(s) 84
BanII GRGCYC 2 cut(s) 33, 420
Bbv12I GWGCWC 2 cut(s) 420, 499
BbvI GCAGC 2 cut(s) 32, 59
BccI CCATC 2 cut(s) 320, 392
BceAI ACGGC 1 cut(s) 453
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BcnI CCSGG 2 cut(s) 133, 413
BfaI CTAG 1 cut(s) 431
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 3 cut(s) 46, 73, 456
BlsI GCNGC 3 cut(s) 47, 74, 457
Bme1390I CCNGG 2 cut(s) 133, 413
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 3 cut(s) 275, 409, 466
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 2 cut(s) 133, 413
BmsI GCATC 1 cut(s) 365
BpmI CTGGAG 2 cut(s) 183, 237
BpuEI CTTGAG 1 cut(s) 247
BpuMI CCSGG 2 cut(s) 133, 413
Bse1I ACTGG 2 cut(s) 431, 504
BseGI GGATG 2 cut(s) 211, 403
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 431, 504
BseRI GAGGAG 1 cut(s) 334
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 2 cut(s) 32, 59
Bsh1236I CGCG 4 cut(s) 155, 280, 303, 407
BshFI GGCC 2 cut(s) 276, 468
BsiHKAI GWGCWC 2 cut(s) 420, 499
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 4 cut(s) 133, 335, 368, 412
BslFI GGGAC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 2 cut(s) 276, 468
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 3 cut(s) 33, 420, 499
Bsp143I GATC 3 cut(s) 84, 150, 460
BspACI CCGC 5 cut(s) 195, 278, 407, 456, 489
BspANI GGCC 2 cut(s) 276, 468
BspCNI CTCAG 1 cut(s) 332
BspFNI CGCG 4 cut(s) 155, 280, 303, 407
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 2 cut(s) 79, 92
BsrBI CCGCTC 1 cut(s) 197
BsrI ACTGG 2 cut(s) 431, 504
BssMI GATC 3 cut(s) 84, 150, 460
Bst6I CTCTTC 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 319
BstF5I GGATG 2 cut(s) 211, 403
BstFNI CGCG 4 cut(s) 155, 280, 303, 407
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 269, 305
BstKTI GATC 3 cut(s) 87, 153, 463
BstMBI GATC 3 cut(s) 84, 150, 460
BstMWI GCNNNNNNNGC 2 cut(s) 273, 503
BstSCI CCNGG 2 cut(s) 131, 411
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 4 cut(s) 155, 280, 303, 407
BstV1I GCAGC 2 cut(s) 32, 59
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 2 cut(s) 276, 468
BtsCI GGATG 2 cut(s) 211, 403
BtsIMutI CAGTG 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 278
CfoI GCGC 2 cut(s) 269, 305
Cfr13I GGNCC 3 cut(s) 275, 409, 466
CpoI CGGWCCG 1 cut(s) 409
CspI CGGWCCG 1 cut(s) 409
CviAII CATG 1 cut(s) 235
DdeI CTNAG 1 cut(s) 319
DpnI GATC 3 cut(s) 86, 152, 462
DpnII GATC 3 cut(s) 84, 150, 460
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Ecl136II GAGCTC 1 cut(s) 418
Eco24I GRGCYC 2 cut(s) 33, 420
Eco47I GGWCC 1 cut(s) 409
Eco47III AGCGCT 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 33, 420
FaeI CATG 1 cut(s) 238
FaiI YATR 4 cut(s) 26, 236, 447, 523
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 234
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 46, 73, 456
FokI GGATG 2 cut(s) 198, 410
FriOI GRGCYC 2 cut(s) 33, 420
Fsp4HI GCNGC 3 cut(s) 46, 73, 456
FspBI CTAG 1 cut(s) 431
GlaI GCGC 2 cut(s) 268, 304
GluI GCNGC 3 cut(s) 46, 73, 456
GsuI CTGGAG 2 cut(s) 183, 237
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 276, 468
HapII CCGG 4 cut(s) 133, 335, 368, 412
HhaI GCGC 2 cut(s) 269, 305
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 2 cut(s) 267, 303
HinP1I GCGC 2 cut(s) 267, 303
HpaII CCGG 4 cut(s) 133, 335, 368, 412
HphI GGTGA 3 cut(s) 154, 237, 278
Hpy166II GTNNAC 3 cut(s) 8, 440, 497
Hpy188I TCNGA 2 cut(s) 182, 376
Hpy188III TCNNGA 3 cut(s) 200, 254, 473
Hpy8I GTNNAC 3 cut(s) 8, 440, 497
Hpy99I CGWCG 2 cut(s) 364, 367
HpyAV CCTTC 3 cut(s) 175, 252, 511
HpyCH4V TGCA 3 cut(s) 20, 356, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 503
HpyF3I CTNAG 1 cut(s) 319
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 2 cut(s) 267, 303
Kzo9I GATC 3 cut(s) 84, 150, 460
LmnI GCTCC 2 cut(s) 202, 415
Lsp1109I GCAGC 2 cut(s) 32, 59
LweI GCATC 1 cut(s) 365
MaeI CTAG 1 cut(s) 431
MalI GATC 3 cut(s) 86, 152, 462
MbiI CCGCTC 1 cut(s) 197
MboI GATC 3 cut(s) 84, 150, 460
MboII GAAGA 3 cut(s) 160, 307, 494
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 3 cut(s) 33, 420, 499
MluCI AATT 3 cut(s) 15, 104, 386
MlyI GAGTC 5 cut(s) 232, 325, 380, 411, 518
MmeI TCCRAC 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 108
MspI CCGG 4 cut(s) 133, 335, 368, 412
MspR9I CCNGG 2 cut(s) 133, 413
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 190
MvnI CGCG 4 cut(s) 155, 280, 303, 407
MwoI GCNNNNNNNGC 2 cut(s) 273, 503
NciI CCSGG 2 cut(s) 133, 413
NdeII GATC 3 cut(s) 84, 150, 460
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 223
PctI GAATGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 5 cut(s) 58, 138, 183, 203, 257
PkrI GCNGC 3 cut(s) 47, 74, 457
PleI GAGTC 5 cut(s) 232, 325, 379, 410, 517
PpsI GAGTC 5 cut(s) 232, 325, 379, 410, 517
Psp124BI GAGCTC 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 3 cut(s) 275, 409, 466
PsuI RGATCY 1 cut(s) 84
Rsr2I CGGWCCG 1 cut(s) 409
RsrII CGGWCCG 1 cut(s) 409
SacI GAGCTC 1 cut(s) 420
SatI GCNGC 3 cut(s) 46, 73, 456
Sau3AI GATC 3 cut(s) 84, 150, 460
Sau96I GGNCC 3 cut(s) 275, 409, 466
SchI GAGTC 5 cut(s) 232, 325, 380, 411, 518
ScrFI CCNGG 2 cut(s) 133, 413
SduI GDGCHC 3 cut(s) 33, 420, 499
SfaNI GCATC 1 cut(s) 365
SinI GGWCC 1 cut(s) 409
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 3 cut(s) 15, 104, 386
SsiI CCGC 5 cut(s) 195, 278, 407, 456, 489
SspMI CTAG 1 cut(s) 431
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 131, 411
TaqI TCGA 4 cut(s) 126, 217, 329, 512
TasI AATT 3 cut(s) 15, 104, 386
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 5 cut(s) 58, 138, 183, 203, 257
TscAI CASTG 1 cut(s) 504
TseI GCWGC 2 cut(s) 45, 72
TspDTI ATGAA 1 cut(s) 434
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 1 cut(s) 504
VneI GTGCAC 1 cut(s) 495
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.