Rh5AG102400

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
9453900 .. 9454152
253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG102400.1

Sequence Viewer

Length: 180 bp
ATGAAGATTCCGTCTGGATTTTCTGTGAAAAATGCAGGGAAAGTTGGAAATGCATCAGTGGGAGTGGAGAATGAGCAAGGTTCGAATTCAAAGCCACTGAAAGAGAAGACCACCAAAGCAGAAAGGCGAGCGATTCAGGAGGCTCAGCGAGTAGCAAAGGCTGCTGCGAAAGGTGCCTGA

Protein Analysis

59

Amino Acids

6.12

Weight (kDa)

10.29

Isoelectric Point (pI)

14.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021567)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019501
rosa_multiflora Rmu_sc0004521.1_g000008 Rmu_sc0004521.1_g000009
rosa_roxburghii Rroxscaffold_1G00063390
rosa_samantha Rh5AG102400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 85
AgsI TTSAA 1 cut(s) 90
ApeKI GCWGC 2 cut(s) 161, 164
ApoI RAATTY 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 83
BanI GGYRCC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 148, 151
BisI GCNGC 2 cut(s) 162, 165
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 2 cut(s) 163, 166
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 83
BseMII CTCAG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 148, 151
BshNI GGYRCC 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 83
Bsp1720I GCTNAGC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 161, 173
BstV1I GCAGC 2 cut(s) 148, 151
BstV2I GAAGAC 1 cut(s) 113
BtsIMutI CAGTG 2 cut(s) 63, 95
Cac8I GCNNGC 1 cut(s) 129
CviJI RGCY 3 cut(s) 94, 143, 161
CviKI_1 RGCY 3 cut(s) 94, 143, 161
DdeI CTNAG 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 162, 165
Fsp4HI GCNGC 2 cut(s) 162, 165
GluI GCNGC 2 cut(s) 162, 165
HinfI GANTC 2 cut(s) 7, 133
Hpy188III TCNNGA 2 cut(s) 15, 137
HpyCH4V TGCA 2 cut(s) 35, 53
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 173
HpyF3I CTNAG 1 cut(s) 144
LpnPI CCDG 2 cut(s) 21, 122
Lsp1109I GCAGC 2 cut(s) 148, 151
LweI GCATC 1 cut(s) 62
MboII GAAGA 2 cut(s) 16, 118
MluCI AATT 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 1 cut(s) 133
Mph1103I ATGCAT 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 161, 173
NlaIV GGNNCC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 55
NspV TTCGAA 1 cut(s) 83
PfeI GAWTC 2 cut(s) 7, 133
PkrI GCNGC 2 cut(s) 163, 166
PspN4I GGNNCC 1 cut(s) 175
SatI GCNGC 2 cut(s) 162, 165
SetI ASST 2 cut(s) 82, 175
SfaNI GCATC 1 cut(s) 62
SfuI TTCGAA 1 cut(s) 83
SgeI CNNG 6 cut(s) 27, 48, 89, 140, 149, 161
Sse9I AATT 1 cut(s) 85
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 85
TfiI GAWTC 2 cut(s) 7, 133
TscAI CASTG 2 cut(s) 63, 102
TseI GCWGC 2 cut(s) 161, 164
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 63, 102
XapI RAATTY 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.