RLG00000019853

expansin-A9-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
57452623 .. 57453091
469 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019853

Sequence Viewer

Length: 306 bp
ATGAGTTATGCCATTTTGGGTTCATTGCTTCTCATACTTCTCATACTACCTAACCATGTCAGTACTACTTACAATAAGCCAAGGTTCAGACCTGCCCTTGGAAGCATGCTCATACCATATCCTACAAAGTGGTGCTTATGGCATGGTTACCACGACGTTGTTCAAGATGGCTATGGCCTCGACACAGTGGCTTTGAGCGACGCCTTGTTCAATGGCGAACAGTCATGTGGTGCATGTTACGACATTCGATGTGTAGACACTAGATCAATTGCCTTTGAACCTTCTTTGCACATGCAAATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

5.99

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025310)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019853
rosa_multiflora Rmu_sc0003244.1_g000020
rosa_samantha Rh2BG422300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 255
AcsI RAATTY 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 3 cut(s) 164, 211, 278
AoxI GGCC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 297
BccI CCATC 1 cut(s) 161
BfaI CTAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 100
BmcAI AGTACT 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 80, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 80, 97
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 23
BshFI GGCC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 263
BspANI GGCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 80, 97
BssMI GATC 1 cut(s) 263
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 2 cut(s) 80, 97
Bst4CI ACNGT 2 cut(s) 187, 222
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 146
BstKTI GATC 1 cut(s) 266
BstMBI GATC 1 cut(s) 263
BstNSI RCATGY 3 cut(s) 109, 237, 295
BstPI GGTNACC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 192
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 107
CseI GACGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 63
CviAII CATG 6 cut(s) 56, 106, 143, 225, 234, 292
CviJI RGCY 4 cut(s) 79, 171, 177, 191
CviKI_1 RGCY 4 cut(s) 79, 171, 177, 191
CviQI GTAC 1 cut(s) 63
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 80, 97
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 80, 97
ErhI CCWWGG 2 cut(s) 80, 97
FaeI CATG 6 cut(s) 59, 109, 146, 228, 237, 295
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 6 cut(s) 55, 105, 142, 224, 233, 291
FblI GTMKAC 1 cut(s) 255
FspBI CTAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 177
HgaI GACGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 6 cut(s) 59, 109, 146, 228, 237, 295
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 2 cut(s) 158, 203
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 187, 222
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 233, 289, 295
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 6 cut(s) 59, 109, 146, 228, 237, 295
Kzo9I GATC 1 cut(s) 263
LpnPI CCDG 1 cut(s) 105
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 146, 236
MalI GATC 1 cut(s) 265
MboI GATC 1 cut(s) 263
MfeI CAATTG 1 cut(s) 267
MluCI AATT 2 cut(s) 267, 297
MnlI CCTC 1 cut(s) 188
MunI CAATTG 1 cut(s) 267
NdeII GATC 1 cut(s) 263
NlaIII CATG 6 cut(s) 59, 109, 146, 228, 237, 295
NspI RCATGY 3 cut(s) 109, 237, 295
PaeI GCATGC 1 cut(s) 109
PspEI GGTNACC 1 cut(s) 146
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
Sau3AI GATC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 64
SetI ASST 5 cut(s) 52, 86, 94, 159, 283
SphI GCATGC 1 cut(s) 109
Sse9I AATT 2 cut(s) 267, 297
SspMI CTAG 1 cut(s) 261
StyI CCWWGG 2 cut(s) 80, 97
TaaI ACNGT 2 cut(s) 187, 222
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 180, 247
TasI AATT 2 cut(s) 267, 297
TatI WGTACW 1 cut(s) 62
TscAI CASTG 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 12, 291
TspRI CASTG 1 cut(s) 192
XapI RAATTY 1 cut(s) 297
XceI RCATGY 3 cut(s) 109, 237, 295
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.