Rh2BG422300

expansin-A9-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
59320181 .. 59333212
13032 bp
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UTR
Exon/CDS
Intron
Rh2BG422300.1

Sequence Viewer

Length: 189 bp
ATGTTCTCCCAAAGGGATGGCATCGACTCATATCAGATCATTACTATAACCCTATCAACTTTTGATTTTGGGCGCAAGTGGTGCTTGTGGCATGGTTACCACGACGTTGTTCAAGATGGCTATGGCCCCGACACAGTGGCTTTGAGCGACGCCTTGTTCAACGGTAGCTATGGCATGATGATGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

7.06

Weight (kDa)

4.46

Isoelectric Point (pI)

18.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025310)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019853
rosa_multiflora Rmu_sc0003244.1_g000020
rosa_samantha Rh2BG422300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 150
AgsI TTSAA 2 cut(s) 113, 160
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
AoxI GGCC 1 cut(s) 124
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 125
BccI CCATC 2 cut(s) 11, 110
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 150
BseGI GGATG 1 cut(s) 22
BshFI GGCC 1 cut(s) 126
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 36
BspANI GGCC 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 127
BssMI GATC 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 136, 164
BstACI GRCGYC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 81
BstEII GGTNACC 1 cut(s) 95
BstF5I GGATG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 17
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 141
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 1 cut(s) 158
CviAII CATG 2 cut(s) 92, 175
CviJI RGCY 4 cut(s) 120, 126, 140, 168
CviKI_1 RGCY 4 cut(s) 120, 126, 140, 168
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco91I GGTNACC 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 95
FaeI CATG 2 cut(s) 95, 178
FaiI YATR 6 cut(s) 31, 47, 93, 123, 171, 176
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 2 cut(s) 91, 174
FokI GGATG 1 cut(s) 29
GlaI GCGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 126
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 2 cut(s) 95, 178
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HinfI GANTC 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 113
Hpy99I CGWCG 2 cut(s) 107, 152
HpyCH4III ACNGT 2 cut(s) 136, 164
HpyCH4IV ACGT 2 cut(s) 105, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpySE526I ACGT 2 cut(s) 105, 185
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 2 cut(s) 95, 178
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 36
LweI GCATC 1 cut(s) 30
MaeII ACGT 2 cut(s) 105, 185
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 1 cut(s) 36
NlaIII CATG 2 cut(s) 95, 178
NlaIV GGNNCC 1 cut(s) 127
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PspEI GGTNACC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 179
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 20
SetI ASST 3 cut(s) 108, 170, 188
SfaNI GCATC 1 cut(s) 30
SgeI CNNG 7 cut(s) 88, 97, 104, 113, 125, 140, 166
SmiMI CAYNNNNRTG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 136, 164
TaiI ACGT 2 cut(s) 108, 188
TaqI TCGA 1 cut(s) 24
TscAI CASTG 1 cut(s) 141
TspRI CASTG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.