Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0030798

Physical Location & Seq

Genomic Coordinates Forward (+)

74857355 .. 74858711

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021399

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTGTGAGGTGCTATTGTTTCCGATTTCATCCCGCCGACTCGGACTCGGCGAGTCATCGCCGAATCAAGAAATCCTCTGGCCTGATCTCAAGAAATCCAGCTCCAGCAAGCGGTTCTTCGCCGACGGCTGGCCTCTCTGGTCTGAAATCCTAGGATTGGACGACGATTTCGAGGCCTCTCCTCCCTCCACCACTGTTTCACCAGTCAGTCAGTCACCACTAGACTTCGTCGTCTCCAACTCTCCATCTCCGAGACTCCGACTACACCAGGGCTATGATAGTCTGATTTATGGAGGATTCAGGATTGCCTACTGGCTGCTGTGCATATTAGGATGGAAGTACTTCTGGACTCCATTATTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0008150 GO:0009593 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0036293 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0060255 GO:0065007 GO:0070482 GO:0070483 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

122

Amino Acids

13.76

Weight (kDa)

5.06

Isoelectric Point (pI)

79.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030798)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000021399 RLG00000036562

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AciI	CCGC	2 cut(s)	34, 112
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	3 cut(s)	111, 129, 157
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	238, 247
AoxI	GGCC	3 cut(s)	80, 131, 174
ApeKI	GCWGC	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp700I	GAANNNNTTC	1 cut(s)	341
AspA2I	CCTAGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	192, 207
AvrII	CCTAGG	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	2 cut(s)	253, 327
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	238, 247
BfaI	CTAG	2 cut(s)	152, 221
BisI	GCNGC	1 cut(s)	317
BlnI	CCTAGG	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	318
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	269
BpmI	CTGGAG	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	151, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 129, 157
Bse1I	ACTGG	2 cut(s)	203, 317
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	151, 268
BseGI	GGATG	2 cut(s)	29, 338
BseLI	CCNNNNNNNGG	3 cut(s)	111, 129, 157
BseNI	ACTGG	2 cut(s)	203, 317
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	303
BshFI	GGCC	3 cut(s)	82, 133, 176
BslI	CCNNNNNNNGG	3 cut(s)	111, 129, 157
BsmAI	GTCTC	2 cut(s)	238, 247
BsmBI	CGTCTC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	82, 133, 176
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	2 cut(s)	34, 112
BspANI	GGCC	3 cut(s)	82, 133, 176
BsrI	ACTGG	2 cut(s)	203, 317
BssECI	CCNNGG	2 cut(s)	151, 268
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	110, 131
BstF5I	GGATG	2 cut(s)	29, 338
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	2 cut(s)	238, 247
BstMBI	GATC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	82, 133, 176
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	29, 338
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	110, 131
Csp6I	GTAC	1 cut(s)	340
CviJI	RGCY	7 cut(s)	82, 102, 129, 133, 176, 273, 316
CviKI_1	RGCY	7 cut(s)	82, 102, 129, 133, 176, 273, 316
CviQI	GTAC	1 cut(s)	340
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	238
FaiI	YATR	3 cut(s)	276, 291, 326
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	2 cut(s)	16, 345
Fsp4HI	GCNGC	1 cut(s)	317
FspBI	CTAG	2 cut(s)	152, 221
GluI	GCNGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	82, 133, 176
HinfI	GANTC	7 cut(s)	39, 45, 53, 64, 255, 297, 349
HphI	GGTGA	2 cut(s)	192, 207
Hpy188I	TCNGA	6 cut(s)	24, 44, 145, 252, 260, 285
Hpy188III	TCNNGA	4 cut(s)	68, 91, 301, 346
Hpy99I	CGWCG	3 cut(s)	128, 167, 233
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	303
MaeI	CTAG	2 cut(s)	152, 221
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	109
MlyI	GAGTC	5 cut(s)	33, 39, 62, 249, 343
MmeI	TCCRAC	2 cut(s)	261, 283
MnlI	CCTC	7 cut(s)	86, 144, 166, 187, 192, 196, 287
MroXI	GAANNNNTTC	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 168
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	64, 297
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	5 cut(s)	33, 39, 61, 249, 343
PpsI	GAGTC	5 cut(s)	33, 39, 61, 249, 343
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	1 cut(s)	85
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	5 cut(s)	33, 39, 62, 249, 343
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	2 cut(s)	12, 104
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SseBI	AGGCCT	1 cut(s)	176
SsiI	CCGC	2 cut(s)	34, 112
SspMI	CTAG	2 cut(s)	152, 221
StuI	AGGCCT	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	171
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	64, 297
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	227
XmaJI	CCTAGG	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	2 cut(s)	152, 221
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.