RLG00000036562

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0030798
Physical Location & Seq
Forward (+)
81976875 .. 81981697
4823 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036562

Sequence Viewer

Length: 420 bp
ATGGTTGTTTCTTCAGACACTGGACATTTCTCGAAACCTGCAGGAGAGCTCATCGAGACTAGGCGACAGAGTGAACGGACAGTCCCGGACTCTTACTCAGTCAGTCTCTCCCGCTATGGACTCTTACTCATCCAGACTAGGCGAGTAGGCGACGGACTCTCACAGTCTCACTCATCACCACTAGACTTCGTCGTCTCCAACTCTCCATCTCCGAGACTCCGACTACACCAGCCCCGGACCACAAACAAGAGTAGTAGCAACAGCGATGCTAAGCATGATGATCATGCCGACGGTGATTCAAACGAGACTTATGGTATGTCCGGACATGGCTCATCCGAAAGTGACTCTCACCATTTGTTTATCGGCGGTACATACATGAGATCCCCCAGGATTCCTGGTGCTGGCAATGGACCCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.03

Weight (kDa)

6.75

Isoelectric Point (pI)

63.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030798)

Species Orthologous Gene IDs
rosa_laevigata RLG00000021399 RLG00000036562

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 46
AccIII TCCGGA 1 cut(s) 320
AciI CCGC 2 cut(s) 112, 366
AclWI GGATC 1 cut(s) 375
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 300
AjnI CCWGG 2 cut(s) 386, 394
AloI GAACNNNNNNTCC 2 cut(s) 66, 98
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 6 cut(s) 50, 110, 171, 199, 208, 299
AlwI GGATC 1 cut(s) 375
AlwNI CAGNNNCTG 1 cut(s) 20
Aor13HI TCCGGA 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 237, 410
AsuC2I CCSGG 2 cut(s) 86, 235
AsuHPI GGTGA 3 cut(s) 168, 305, 341
AvaII GGWCC 2 cut(s) 237, 410
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 51
BccI CCATC 1 cut(s) 214
BciT130I CCWGG 2 cut(s) 388, 396
BclI TGATCA 1 cut(s) 280
BcnI CCSGG 2 cut(s) 86, 235
BcoDI GTCTC 6 cut(s) 50, 110, 171, 199, 208, 299
BfaI CTAG 3 cut(s) 60, 138, 182
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 46
BlpI GCTNAGC 1 cut(s) 270
Bme1390I CCNGG 4 cut(s) 86, 235, 388, 396
Bme18I GGWCC 2 cut(s) 237, 410
BmgT120I GGNCC 2 cut(s) 237, 410
BmiI GGNNCC 1 cut(s) 412
BmrFI CCNGG 4 cut(s) 86, 235, 388, 396
BmsI GCATC 1 cut(s) 256
Bpu1102I GCTNAGC 1 cut(s) 270
BpuMI CCSGG 2 cut(s) 86, 235
BsaJI CCNNGG 2 cut(s) 233, 386
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 412
BseAI TCCGGA 1 cut(s) 320
BseBI CCWGG 2 cut(s) 388, 396
BseDI CCNNGG 2 cut(s) 233, 386
BseGI GGATG 2 cut(s) 129, 332
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 3 cut(s) 86, 235, 321
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 6 cut(s) 50, 110, 171, 199, 208, 299
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 320
Bsp143I GATC 2 cut(s) 280, 380
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 2 cut(s) 112, 366
BspCNI CTCAG 1 cut(s) 110
BspEI TCCGGA 1 cut(s) 320
BspLI GGNNCC 1 cut(s) 412
BspMAI CTGCAG 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 233, 386
BssMI GATC 2 cut(s) 280, 380
Bst2UI CCWGG 2 cut(s) 388, 396
Bst4CI ACNGT 3 cut(s) 82, 165, 293
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 2 cut(s) 97, 270
BstF5I GGATG 2 cut(s) 129, 332
BstKTI GATC 2 cut(s) 283, 383
BstMAI GTCTC 6 cut(s) 50, 110, 171, 199, 208, 299
BstMBI GATC 2 cut(s) 280, 380
BstNI CCWGG 2 cut(s) 388, 396
BstSCI CCNGG 4 cut(s) 84, 233, 386, 394
BstSFI CTRYAG 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 129, 332
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 403
CaiI CAGNNNCTG 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 237, 410
Csp6I GTAC 1 cut(s) 369
CviAII CATG 4 cut(s) 275, 284, 326, 376
CviJI RGCY 3 cut(s) 49, 232, 330
CviKI_1 RGCY 3 cut(s) 49, 232, 330
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 97, 270
DpnI GATC 2 cut(s) 282, 382
DpnII GATC 2 cut(s) 280, 380
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 237, 410
Eco53kI GAGCTC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 2 cut(s) 386, 394
EcoT38I GRGCYC 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 4 cut(s) 278, 287, 329, 379
FaiI YATR 8 cut(s) 117, 276, 285, 312, 317, 327, 373, 377
FaqI GGGAC 1 cut(s) 68
FatI CATG 4 cut(s) 274, 283, 325, 375
FauI CCCGC 1 cut(s) 119
FbaI TGATCA 1 cut(s) 280
FokI GGATG 2 cut(s) 116, 319
FriOI GRGCYC 1 cut(s) 51
FspBI CTAG 3 cut(s) 60, 138, 182
HapII CCGG 3 cut(s) 86, 235, 321
Hin1II CATG 4 cut(s) 278, 287, 329, 379
HinfI GANTC 7 cut(s) 89, 120, 156, 216, 296, 344, 391
HpaII CCGG 3 cut(s) 86, 235, 321
HphI GGTGA 3 cut(s) 168, 305, 341
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 4 cut(s) 16, 213, 221, 337
Hpy188III TCNNGA 4 cut(s) 31, 55, 133, 321
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 3 cut(s) 155, 194, 293
HpyCH4III ACNGT 3 cut(s) 82, 165, 293
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 97, 270
Hsp92II CATG 4 cut(s) 278, 287, 329, 379
Kpn2I TCCGGA 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 280, 380
LweI GCATC 1 cut(s) 256
MaeI CTAG 3 cut(s) 60, 138, 182
MaeIII GTNAC 1 cut(s) 341
MalI GATC 2 cut(s) 282, 382
MboI GATC 2 cut(s) 280, 380
MboII GAAGA 1 cut(s) 3
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 51
MlyI GAGTC 5 cut(s) 83, 114, 150, 210, 338
MmeI TCCRAC 2 cut(s) 222, 244
MroI TCCGGA 1 cut(s) 320
MseI TTAA 1 cut(s) 418
MspI CCGG 3 cut(s) 86, 235, 321
MspR9I CCNGG 4 cut(s) 86, 235, 388, 396
MvaI CCWGG 2 cut(s) 388, 396
NciI CCSGG 2 cut(s) 86, 235
NdeII GATC 2 cut(s) 280, 380
NlaIII CATG 4 cut(s) 278, 287, 329, 379
NlaIV GGNNCC 1 cut(s) 412
NmuCI GTSAC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 296, 391
PflFI GACNNNGTC 1 cut(s) 188
PfoI TCCNGGA 1 cut(s) 84
PleI GAGTC 5 cut(s) 83, 114, 150, 210, 338
PpsI GAGTC 5 cut(s) 83, 114, 150, 210, 338
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 386, 394
PspGI CCWGG 2 cut(s) 386, 394
PspN4I GGNNCC 1 cut(s) 412
PspPI GGNCC 2 cut(s) 237, 410
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 380
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 418
Sau3AI GATC 2 cut(s) 280, 380
Sau96I GGNCC 2 cut(s) 237, 410
SbfI CCTGCAGG 1 cut(s) 43
SchI GAGTC 5 cut(s) 83, 114, 150, 210, 338
ScrFI CCNGG 4 cut(s) 86, 235, 388, 396
SdaI CCTGCAGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 51
SetI ASST 2 cut(s) 40, 51
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 2 cut(s) 237, 410
Sse8387I CCTGCAGG 1 cut(s) 43
SsiI CCGC 2 cut(s) 112, 366
SspMI CTAG 3 cut(s) 60, 138, 182
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 4 cut(s) 84, 233, 386, 394
TaaI ACNGT 3 cut(s) 82, 165, 293
TaqI TCGA 2 cut(s) 32, 54
TfiI GAWTC 2 cut(s) 296, 391
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspGWI ACGGA 2 cut(s) 91, 168
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 237, 410
XspI CTAG 3 cut(s) 60, 138, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.