RLG00000021614

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
76736900 .. 76738075
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021614

Sequence Viewer

Length: 1176 bp
ATGGCAACAAAATTAGCACCAGATCAGCAAGTTCCCTCCCGCAAAATCGAATCAATGTCAATCTCCGACCACTCTGATGCTCCTGAAGACCAACAAATGAGTTTGGACGAGAGGTACGTGCTGATTACAAGCATAGTGGATCCGGAGGAGCAAAATATTGAAGAGGATGATAAGGAGCTTCGGAATGAGGAGCTTCGGAATCTGCTGCATCGCAAGTCCGAACCCATCGCGTACGACGGCTTCGAACCCTCAGGTAGGATGCACATAGCTCAGGGAGTTCTCAAAGCAATAAACGTGAACAAGCTCACCGACGCCGGCTGCAAGGTAAAACTTCTGATAGCAGATTGGTTTGCAATGATGAACGACAAGATGGGGGGTGACATGCAAAAGATTGAGACCGTGGGTCGATACTTCATTGAGGTCTGGAAATCTGTGGGGATGAAGAACCTGGAAAAAGTCGAGTTTGTTTGGTCTTCCAAGGAGATTAGCTCCAGAGGACACGAGTACTGGCCTCGTGTAATAGACATTGCTAGACGAAACAGCCTGAATAGGATAATCAGATGTACGCAAATTATGGGTCGAGAAGATCGAGATAACTTGAGTGCAGCACAAATCATGTACCCATGTATGCAATGTGCCGATGTTTTCTTCTTGAATGCTGACATCTGCCAGATGGGAACGGACCAGCTCAAAGTGAACATGCTTGCGAGAGAGTACTGCGACAAAATCAAGAAGGACAAGCCTGTGATCTTGTCGCATCGCATGCTGCCCGGCTTGAAGGAAGGGCAGGATAAAATGTCGAAAAGCGATCCGACCTCCGCCATATATATGGAAGATGATGAGGCCGAAGTGAACTTGAAAATCAAGAAAGCTCACTGTGCTCCAAAAGAGGTCGAGGGAAATCCGTGTTTGGAGTATGTGCAGCACCTGGTCTTCCCATGGTTTCATGAGTTTGTTGTGGAGCGAAGCGAAAAGAATGGCGGAGACAAGACTTTTGCAAATTTTCAGGACCTGAGTAAGGATTATGCAAGCGGCGAGCTTCATCCCGGAGACCTGAAACCGGCATTGGCGAAAGCCTTGAACAAAATATTAGAGCCGGTAAGGTCACACTTCAAGAATGACCCAACTGCAAAGCAGCTATTACAAAGTGTTAAGAGCTTCAGAGTCACCAGGTGA

Protein Analysis

392

Amino Acids

44.77

Weight (kDa)

6.0

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 73 - 365 1.9e-60 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019898)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0166361
rosa_laevigata RLG00000021614
rosa_multiflora Rmu_sc0007974.1_g000003
rosa_roxburghii Rroxscaffold_2G00084940
rosa_samantha Rh2BG600600 Rh2DG610800
rosa_wichuraiana Rw2G049050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 230
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 4 cut(s) 40, 819, 981, 1032
AclWI GGATC 3 cut(s) 134, 147, 803
AcsI RAATTY 1 cut(s) 1000
AcuI CTGAAG 2 cut(s) 105, 1144
AcyI GRCGYC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 1173
AfaI GTAC 6 cut(s) 116, 233, 506, 565, 620, 716
AfiI CCNNNNNNNGG 3 cut(s) 255, 1018, 1060
AgsI TTSAA 6 cut(s) 161, 655, 778, 859, 1081, 1114
AhdI GACNNNNNGTC 1 cut(s) 402
AjnI CCWGG 3 cut(s) 447, 927, 1169
AjuI GAANNNNNNNTTGG 2 cut(s) 1049, 1081
Alw21I GWGCWC 1 cut(s) 883
Alw26I GTCTC 3 cut(s) 389, 978, 1044
AlwI GGATC 3 cut(s) 134, 147, 803
AlwNI CAGNNNCTG 2 cut(s) 928, 1012
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 2 cut(s) 509, 843
ApeKI GCWGC 6 cut(s) 205, 318, 605, 766, 922, 1135
ApoI RAATTY 1 cut(s) 1000
ArsI GACNNNNNNTTYG 4 cut(s) 562, 594, 977, 1009
AspS9I GGNCC 2 cut(s) 682, 1009
AsuC2I CCSGG 2 cut(s) 771, 1047
AsuHPI GGTGA 3 cut(s) 298, 389, 1159
AsuII TTCGAA 1 cut(s) 243
AvaII GGWCC 2 cut(s) 682, 1009
AxyI CCTNAGG 1 cut(s) 250
BamHI GGATCC 1 cut(s) 139
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BauI CACGAG 2 cut(s) 500, 513
BbsI GAAGAC 3 cut(s) 93, 465, 925
Bbv12I GWGCWC 1 cut(s) 883
BbvI GCAGC 6 cut(s) 192, 305, 617, 753, 934, 1147
BccI CCATC 3 cut(s) 233, 364, 667
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 3 cut(s) 449, 929, 1171
BcnI CCSGG 2 cut(s) 771, 1047
BcoDI GTCTC 3 cut(s) 389, 978, 1044
BfaI CTAG 1 cut(s) 531
BisI GCNGC 7 cut(s) 206, 319, 606, 767, 923, 1033, 1136
BlsI GCNGC 7 cut(s) 207, 320, 607, 768, 924, 1034, 1137
BmcAI AGTACT 2 cut(s) 506, 716
Bme1390I CCNGG 5 cut(s) 449, 771, 929, 1047, 1171
Bme18I GGWCC 2 cut(s) 682, 1009
BmeRI GACNNNNNGTC 1 cut(s) 402
BmgT120I GGNCC 2 cut(s) 682, 1009
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 5 cut(s) 449, 771, 929, 1047, 1171
BmsI GCATC 4 cut(s) 67, 217, 249, 766
BpiI GAAGAC 3 cut(s) 93, 465, 925
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpmI CTGGAG 1 cut(s) 475
Bpu10I CCTNAGC 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 619
BpuMI CCSGG 2 cut(s) 771, 1047
BsaAI YACGTR 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 312
BsaI GGTCTC 2 cut(s) 389, 1044
BsaJI CCNNGG 3 cut(s) 399, 477, 938
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 1018, 1060
Bse118I RCCGGY 3 cut(s) 314, 1060, 1096
Bse1I ACTGG 1 cut(s) 512
Bse21I CCTNAGG 1 cut(s) 250
Bse3DI GCAATG 3 cut(s) 360, 525, 638
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 3 cut(s) 449, 929, 1171
BseDI CCNNGG 3 cut(s) 399, 477, 938
BseGI GGATG 4 cut(s) 172, 264, 444, 1042
BseLI CCNNNNNNNGG 3 cut(s) 255, 1018, 1060
BseMI GCAATG 3 cut(s) 360, 525, 638
BseMII CTCAG 3 cut(s) 264, 284, 1004
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 2 cut(s) 161, 203
BseXI GCAGC 6 cut(s) 192, 305, 617, 753, 934, 1147
BsgI GTGCAG 2 cut(s) 624, 941
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 2 cut(s) 511, 845
BsiHKAI GWGCWC 1 cut(s) 883
BsiSI CCGG 6 cut(s) 143, 315, 771, 1047, 1061, 1097
BsiWI CGTACG 1 cut(s) 231
BslI CCNNNNNNNGG 3 cut(s) 255, 1018, 1060
BsmAI GTCTC 3 cut(s) 389, 978, 1044
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 2 cut(s) 511, 845
Bso31I GGTCTC 2 cut(s) 389, 1044
Bsp119I TTCGAA 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 883
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 5 cut(s) 22, 139, 586, 747, 808
Bsp19I CCATGG 1 cut(s) 938
BspACI CCGC 4 cut(s) 40, 819, 981, 1032
BspANI GGCC 2 cut(s) 511, 845
BspCNI CTCAG 3 cut(s) 263, 283, 1005
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 1 cut(s) 230
BspHI TCATGA 1 cut(s) 946
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 3 cut(s) 134, 147, 803
BspT104I TTCGAA 1 cut(s) 243
BspTNI GGTCTC 2 cut(s) 389, 1044
BsrDI GCAATG 3 cut(s) 360, 525, 638
BsrFI RCCGGY 3 cut(s) 314, 1060, 1096
BsrI ACTGG 1 cut(s) 512
BssAI RCCGGY 3 cut(s) 314, 1060, 1096
BssECI CCNNGG 3 cut(s) 399, 477, 938
BssMI GATC 5 cut(s) 22, 139, 586, 747, 808
BssNI GRCGYC 1 cut(s) 312
BssSI CACGAG 2 cut(s) 500, 513
BssT1I CCWWGG 2 cut(s) 477, 938
Bst2BI CACGAG 2 cut(s) 500, 513
Bst2UI CCWGG 3 cut(s) 449, 929, 1171
Bst4CI ACNGT 2 cut(s) 400, 878
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 763
BstBAI YACGTR 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 5 cut(s) 316, 705, 764, 1030, 1037
BstDEI CTNAG 3 cut(s) 250, 270, 1013
BstDSI CCRYGG 2 cut(s) 399, 938
BstENI CCTNNNNNAGG 2 cut(s) 253, 1016
BstF5I GGATG 4 cut(s) 172, 264, 444, 1042
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 5 cut(s) 25, 142, 589, 750, 811
BstMAI GTCTC 3 cut(s) 389, 978, 1044
BstMBI GATC 5 cut(s) 22, 139, 586, 747, 808
BstMWI GCNNNNNNNGC 2 cut(s) 763, 878
BstNI CCWGG 3 cut(s) 449, 929, 1171
BstNSI RCATGY 3 cut(s) 385, 703, 766
BstSCI CCNGG 5 cut(s) 447, 769, 927, 1045, 1169
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 6 cut(s) 192, 305, 617, 753, 934, 1147
BstV2I GAAGAC 3 cut(s) 93, 465, 925
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 829
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 250
BsuRI GGCC 2 cut(s) 511, 845
BtgI CCRYGG 2 cut(s) 399, 938
BtgZI GCGATG 3 cut(s) 194, 211, 743
BtsCI GGATG 4 cut(s) 172, 264, 444, 1042
BtsIMutI CAGTG 1 cut(s) 874
Cac8I GCNNGC 5 cut(s) 316, 705, 764, 1030, 1037
CaiI CAGNNNCTG 2 cut(s) 928, 1012
CciI TCATGA 1 cut(s) 946
Cfr10I RCCGGY 3 cut(s) 314, 1060, 1096
Cfr13I GGNCC 2 cut(s) 682, 1009
CseI GACGC 1 cut(s) 320
CsiI ACCWGGT 2 cut(s) 927, 1169
Csp6I GTAC 6 cut(s) 115, 232, 505, 564, 619, 715
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 7 cut(s) 382, 616, 624, 700, 763, 939, 947
CviQI GTAC 6 cut(s) 115, 232, 505, 564, 619, 715
DdeI CTNAG 3 cut(s) 250, 270, 1013
DpnI GATC 5 cut(s) 24, 141, 588, 749, 810
DpnII GATC 5 cut(s) 22, 139, 586, 747, 808
DraIII CACNNNGTG 1 cut(s) 1173
DriI GACNNNNNGTC 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 156
Eam1105I GACNNNNNGTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 2 cut(s) 808, 996
Eco130I CCWWGG 2 cut(s) 477, 938
Eco31I GGTCTC 2 cut(s) 389, 1044
Eco47I GGWCC 2 cut(s) 682, 1009
Eco57I CTGAAG 2 cut(s) 105, 1144
Eco81I CCTNAGG 1 cut(s) 250
EcoNI CCTNNNNNAGG 2 cut(s) 253, 1016
EcoO109I RGGNCCY 1 cut(s) 1009
EcoRII CCWGG 3 cut(s) 447, 927, 1169
EcoT14I CCWWGG 2 cut(s) 477, 938
ErhI CCWWGG 2 cut(s) 477, 938
FaeI CATG 7 cut(s) 385, 619, 627, 703, 766, 942, 950
FatI CATG 7 cut(s) 381, 615, 623, 699, 762, 938, 946
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 7 cut(s) 206, 319, 606, 767, 923, 1033, 1136
FokI GGATG 4 cut(s) 179, 271, 451, 1029
Fsp4HI GCNGC 7 cut(s) 206, 319, 606, 767, 923, 1033, 1136
FspBI CTAG 1 cut(s) 531
GluI GCNGC 7 cut(s) 206, 319, 606, 767, 923, 1033, 1136
GsuI CTGGAG 1 cut(s) 475
HaeIII GGCC 2 cut(s) 511, 845
HapII CCGG 6 cut(s) 143, 315, 771, 1047, 1061, 1097
HgaI GACGC 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 7 cut(s) 385, 619, 627, 703, 766, 942, 950
HinfI GANTC 3 cut(s) 50, 199, 1164
HpaII CCGG 6 cut(s) 143, 315, 771, 1047, 1061, 1097
HphI GGTGA 3 cut(s) 298, 389, 1159
Hpy166II GTNNAC 3 cut(s) 298, 697, 853
Hpy188I TCNGA 9 cut(s) 67, 76, 183, 198, 220, 336, 560, 813, 1163
Hpy8I GTNNAC 3 cut(s) 298, 697, 853
Hpy99I CGWCG 2 cut(s) 239, 314
HpyAV CCTTC 3 cut(s) 727, 772, 776
HpyCH4III ACNGT 2 cut(s) 400, 878
HpyCH4IV ACGT 2 cut(s) 117, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 763, 878
HpyF3I CTNAG 3 cut(s) 250, 270, 1013
HpySE526I ACGT 2 cut(s) 117, 294
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 7 cut(s) 385, 619, 627, 703, 766, 942, 950
Kpn2I TCCGGA 1 cut(s) 142
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
Kzo9I GATC 5 cut(s) 22, 139, 586, 747, 808
LmnI GCTCC 7 cut(s) 85, 148, 175, 190, 494, 886, 961
Lsp1109I GCAGC 6 cut(s) 192, 305, 617, 753, 934, 1147
LweI GCATC 4 cut(s) 67, 217, 249, 766
MabI ACCWGGT 2 cut(s) 927, 1169
MaeI CTAG 1 cut(s) 531
MaeII ACGT 2 cut(s) 117, 294
MaeIII GTNAC 3 cut(s) 377, 1104, 1165
MalI GATC 5 cut(s) 24, 141, 588, 749, 810
MboI GATC 5 cut(s) 22, 139, 586, 747, 808
MboII GAAGA 8 cut(s) 98, 173, 454, 465, 596, 640, 845, 925
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 883
MluCI AATT 3 cut(s) 11, 570, 1000
MlyI GAGTC 1 cut(s) 1173
MmeI TCCRAC 2 cut(s) 90, 836
MroI TCCGGA 1 cut(s) 142
MroNI GCCGGC 1 cut(s) 314
MseI TTAA 1 cut(s) 1152
MslI CAYNNNNRTG 2 cut(s) 75, 827
MspI CCGG 6 cut(s) 143, 315, 771, 1047, 1061, 1097
MspR9I CCNGG 5 cut(s) 449, 771, 929, 1047, 1171
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 3 cut(s) 449, 929, 1171
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 763, 878
NaeI GCCGGC 1 cut(s) 316
NciI CCSGG 2 cut(s) 771, 1047
NcoI CCATGG 1 cut(s) 938
NdeII GATC 5 cut(s) 22, 139, 586, 747, 808
NgoMIV GCCGGC 1 cut(s) 314
NlaIII CATG 7 cut(s) 385, 619, 627, 703, 766, 942, 950
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 3 cut(s) 377, 1104, 1165
NspI RCATGY 3 cut(s) 385, 703, 766
NspV TTCGAA 1 cut(s) 243
PaeI GCATGC 1 cut(s) 766
PagI TCATGA 1 cut(s) 946
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 240, 586
PctI GAATGC 1 cut(s) 661
PdiI GCCGGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 50, 199
Pfl23II CGTACG 1 cut(s) 231
PfoI TCCNGGA 1 cut(s) 1045
PkrI GCNGC 7 cut(s) 207, 320, 607, 768, 924, 1034, 1137
PleI GAGTC 1 cut(s) 1172
PpsI GAGTC 1 cut(s) 1172
Ppu21I YACGTR 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 1009
Psp5II RGGWCCY 1 cut(s) 1009
Psp6I CCWGG 3 cut(s) 447, 927, 1169
PspGI CCWGG 3 cut(s) 447, 927, 1169
PspLI CGTACG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 2 cut(s) 682, 1009
PspPPI RGGWCCY 1 cut(s) 1009
PstNI CAGNNNCTG 2 cut(s) 928, 1012
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 6 cut(s) 116, 233, 506, 565, 620, 716
RsaNI GTAC 6 cut(s) 115, 232, 505, 564, 619, 715
RseI CAYNNNNRTG 2 cut(s) 75, 827
SaqAI TTAA 1 cut(s) 1152
SatI GCNGC 7 cut(s) 206, 319, 606, 767, 923, 1033, 1136
Sau3AI GATC 5 cut(s) 22, 139, 586, 747, 808
Sau96I GGNCC 2 cut(s) 682, 1009
ScaI AGTACT 2 cut(s) 506, 716
SchI GAGTC 1 cut(s) 1173
ScrFI CCNGG 5 cut(s) 449, 771, 929, 1047, 1171
SduI GDGCHC 1 cut(s) 883
SexAI ACCWGGT 2 cut(s) 927, 1169
SfaNI GCATC 4 cut(s) 67, 217, 249, 766
SfuI TTCGAA 1 cut(s) 243
SinI GGWCC 2 cut(s) 682, 1009
SmiMI CAYNNNNRTG 2 cut(s) 75, 827
SmlI CTYRAG 1 cut(s) 598
SmoI CTYRAG 1 cut(s) 598
SphI GCATGC 1 cut(s) 766
Sse9I AATT 3 cut(s) 11, 570, 1000
SsiI CCGC 4 cut(s) 40, 819, 981, 1032
SspI AATATT 2 cut(s) 157, 1089
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 5 cut(s) 447, 769, 927, 1045, 1169
StyI CCWWGG 2 cut(s) 477, 938
TaaI ACNGT 2 cut(s) 400, 878
TaiI ACGT 2 cut(s) 120, 297
TaqI TCGA 8 cut(s) 48, 243, 406, 459, 580, 589, 800, 894
TasI AATT 3 cut(s) 11, 570, 1000
TatI WGTACW 2 cut(s) 504, 714
TauI GCSGC 1 cut(s) 1035
TfiI GAWTC 2 cut(s) 50, 199
Tru1I TTAA 1 cut(s) 1152
Tru9I TTAA 1 cut(s) 1152
TscAI CASTG 1 cut(s) 881
TseFI GTSAC 3 cut(s) 377, 1104, 1165
TseI GCWGC 6 cut(s) 205, 318, 605, 766, 922, 1135
Tsp45I GTSAC 3 cut(s) 377, 1104, 1165
TspDTI ATGAA 5 cut(s) 374, 403, 455, 935, 1031
TspGWI ACGGA 2 cut(s) 695, 894
TspRI CASTG 1 cut(s) 881
VpaK11BI GGWCC 2 cut(s) 682, 1009
XagI CCTNNNNNAGG 2 cut(s) 253, 1016
XapI RAATTY 1 cut(s) 1000
XceI RCATGY 3 cut(s) 385, 703, 766
XspI CTAG 1 cut(s) 531
ZrmI AGTACT 2 cut(s) 506, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.