Rh2DG610800

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
84350071 .. 84351231
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG610800.1

Sequence Viewer

Length: 1161 bp
ATGGCAACAAAATTAGCACCAGATCAGCAAGTTCCCTCCCGCAAAATCGAATCAATGTCAATCTCCGACCACTCTGATGCGCCTGAAGACCAACAAATGAGTTTGGACGAGAGGTACGTGCTGATTACAAGCATAGTGGATCCGGAGGAGCGAAATATTGAAGAGGATGATAAGGAGCTTCGGAATCTGCTGCATCGCAAGTCCGAACCCATCGCGTACGACGGCTTTGAGCCCTCAGGTCGGATGCACATAGCTCAGGGAGTTCTCAAAGCAATAAACGTGAACAAGCTCACCGACGCCGGTTGCAGGGTAAAACTTCTGATAGCAGATTGGTTTGCAATGATGAACGGCAAGATGGGGGGTGACATGCAAAAGATTGAGACCGTGGGTCGATACTTCATTGAGGTCTGGAAATCTGTGGGGATGAAGAACCTGGAAAAAGTCGAGTTTGTTTGGTCTTCCAAGGAGATTAGCTCCAGAGGACACGAGTACTGGCCTCGTGTAATGGACATTGCTAGACGAAACAGCCTGAATAGGATAATCAGATGTACGCAAATTATGGGTCGAGAAGATCGAGATAACTTGAGTGCAGCACAAATCATGTACCCATGTATGCAATGTGCCGATGTTTTCTTCTTGAATGCTGACATCTGCCAGATGGGAACGGACCAGCTCAAAGTGAACATGCTTGCGAGAGAGTACTGCGACAAAATCAAGGAGGACAAGCCTGTGATCTTGTCGCATCGCATGCTGCCCGGCTTGAAGGAAGGGCAGGATAAAATGTCGAAAAGCGATCCGACCTCGGCCATATATATGGAAGATGATGAGGCCGAAGTGAACTTGAAAATCAAGAAAGCTCACTGTGCTCCAAAAGAGGTCGAGGGAAATCCGTGTTTGGAGTATGTGCAGCACCTGGTTTTCCCATGGTTTCATGAGTTTGTTGTGGAGCGAAGCGAAAAGAATGGCGGAGACAAGACTTTTGCAAACTTTCAGGACCTGAGTAAGGATTATGCAAACGGCGAGCTTCATCCTGGAGACCTGAAACCGGCATTGGCGAAAGCCTTGAACAAAATATTAGAGCCGGTAAGGTCACACTTCAAGAATGACCCAACTGCAAAGCAGCTGTTACAAAGTGTGAAGAGTTTCCGAGTCACCAGGTGA

Protein Analysis

386

Amino Acids

44.17

Weight (kDa)

6.12

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 68 - 360 2.3e-60 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019898)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0166361
rosa_laevigata RLG00000021614
rosa_multiflora Rmu_sc0007974.1_g000003
rosa_roxburghii Rroxscaffold_2G00084940
rosa_samantha Rh2BG600600 Rh2DG610800
rosa_wichuraiana Rw2G049050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 215
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 2 cut(s) 40, 966
AclWI GGATC 3 cut(s) 134, 147, 788
AcoI YGGCCR 1 cut(s) 804
AcuI CTGAAG 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 297
AdeI CACNNNGTG 1 cut(s) 1158
AfaI GTAC 6 cut(s) 116, 218, 491, 550, 605, 701
AfiI CCNNNNNNNGG 4 cut(s) 240, 306, 1003, 1045
AgsI TTSAA 6 cut(s) 161, 640, 763, 844, 1066, 1099
AhdI GACNNNNNGTC 1 cut(s) 387
AjnI CCWGG 4 cut(s) 432, 912, 1030, 1154
AjuI GAANNNNNNNTTGG 2 cut(s) 1034, 1066
AluBI AGCT 8 cut(s) 178, 254, 289, 474, 673, 857, 1024, 1123
AluI AGCT 8 cut(s) 178, 254, 289, 474, 673, 857, 1024, 1123
Alw21I GWGCWC 1 cut(s) 868
Alw26I GTCTC 3 cut(s) 374, 963, 1029
AlwI GGATC 3 cut(s) 134, 147, 788
AlwNI CAGNNNCTG 2 cut(s) 913, 997
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 3 cut(s) 494, 804, 828
ApeKI GCWGC 5 cut(s) 190, 590, 751, 907, 1120
ArsI GACNNNNNNTTYG 4 cut(s) 547, 579, 962, 994
Asp700I GAANNNNTTC 1 cut(s) 1142
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 667, 994
AsuC2I CCSGG 1 cut(s) 756
AsuHPI GGTGA 3 cut(s) 283, 374, 1144
AvaII GGWCC 2 cut(s) 667, 994
AxyI CCTNAGG 1 cut(s) 235
BamHI GGATCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 234
BauI CACGAG 2 cut(s) 485, 498
BbsI GAAGAC 2 cut(s) 93, 450
Bbv12I GWGCWC 1 cut(s) 868
BbvI GCAGC 5 cut(s) 177, 602, 738, 919, 1132
BccI CCATC 3 cut(s) 218, 349, 652
BceAI ACGGC 3 cut(s) 238, 364, 1033
BciT130I CCWGG 4 cut(s) 434, 914, 1032, 1156
BcnI CCSGG 1 cut(s) 756
BcoDI GTCTC 3 cut(s) 374, 963, 1029
BfaI CTAG 1 cut(s) 516
BisI GCNGC 5 cut(s) 191, 591, 752, 908, 1121
BlsI GCNGC 5 cut(s) 192, 592, 753, 909, 1122
BmcAI AGTACT 2 cut(s) 491, 701
Bme1390I CCNGG 5 cut(s) 434, 756, 914, 1032, 1156
Bme18I GGWCC 2 cut(s) 667, 994
BmeRI GACNNNNNGTC 1 cut(s) 387
BmgT120I GGNCC 2 cut(s) 667, 994
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 5 cut(s) 434, 756, 914, 1032, 1156
BmsI GCATC 4 cut(s) 67, 202, 234, 751
BpiI GAAGAC 2 cut(s) 93, 450
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 2 cut(s) 460, 1053
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 604
BpuMI CCSGG 1 cut(s) 756
BsaAI YACGTR 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 2 cut(s) 374, 1029
BsaJI CCNNGG 4 cut(s) 384, 462, 801, 923
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 4 cut(s) 240, 306, 1003, 1045
Bse118I RCCGGY 3 cut(s) 299, 1045, 1081
Bse1I ACTGG 1 cut(s) 497
Bse21I CCTNAGG 1 cut(s) 235
Bse3DI GCAATG 3 cut(s) 345, 510, 623
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 4 cut(s) 434, 914, 1032, 1156
BseDI CCNNGG 4 cut(s) 384, 462, 801, 923
BseGI GGATG 4 cut(s) 172, 249, 429, 1027
BseLI CCNNNNNNNGG 4 cut(s) 240, 306, 1003, 1045
BseMI GCAATG 3 cut(s) 345, 510, 623
BseMII CTCAG 3 cut(s) 249, 269, 989
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 5 cut(s) 177, 602, 738, 919, 1132
BsgI GTGCAG 2 cut(s) 609, 926
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 3 cut(s) 496, 806, 830
BsiHKAI GWGCWC 1 cut(s) 868
BsiSI CCGG 5 cut(s) 143, 300, 756, 1046, 1082
BsiWI CGTACG 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 240, 306, 1003, 1045
BsmAI GTCTC 3 cut(s) 374, 963, 1029
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 3 cut(s) 496, 806, 830
Bso31I GGTCTC 2 cut(s) 374, 1029
Bsp1286I GDGCHC 2 cut(s) 234, 868
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 5 cut(s) 22, 139, 571, 732, 793
Bsp19I CCATGG 1 cut(s) 923
BspACI CCGC 2 cut(s) 40, 966
BspANI GGCC 3 cut(s) 496, 806, 830
BspCNI CTCAG 3 cut(s) 248, 268, 990
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 1 cut(s) 215
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 3 cut(s) 134, 147, 788
BspTNI GGTCTC 2 cut(s) 374, 1029
BsrDI GCAATG 3 cut(s) 345, 510, 623
BsrFI RCCGGY 3 cut(s) 299, 1045, 1081
BsrI ACTGG 1 cut(s) 497
BssAI RCCGGY 3 cut(s) 299, 1045, 1081
BssECI CCNNGG 4 cut(s) 384, 462, 801, 923
BssMI GATC 5 cut(s) 22, 139, 571, 732, 793
BssNI GRCGYC 1 cut(s) 297
BssSI CACGAG 2 cut(s) 485, 498
BssT1I CCWWGG 2 cut(s) 462, 923
Bst2BI CACGAG 2 cut(s) 485, 498
Bst2UI CCWGG 4 cut(s) 434, 914, 1032, 1156
Bst4CI ACNGT 2 cut(s) 385, 863
Bst6I CTCTTC 2 cut(s) 156, 1133
BstACI GRCGYC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 748
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 3 cut(s) 690, 749, 1022
BstDEI CTNAG 3 cut(s) 235, 255, 998
BstDSI CCRYGG 2 cut(s) 384, 923
BstENI CCTNNNNNAGG 1 cut(s) 1001
BstF5I GGATG 4 cut(s) 172, 249, 429, 1027
BstFNI CGCG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 5 cut(s) 25, 142, 574, 735, 796
BstMAI GTCTC 3 cut(s) 374, 963, 1029
BstMBI GATC 5 cut(s) 22, 139, 571, 732, 793
BstMWI GCNNNNNNNGC 2 cut(s) 748, 863
BstNI CCWGG 4 cut(s) 434, 914, 1032, 1156
BstNSI RCATGY 3 cut(s) 370, 688, 751
BstSCI CCNGG 5 cut(s) 432, 754, 912, 1030, 1154
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 5 cut(s) 177, 602, 738, 919, 1132
BstV2I GAAGAC 2 cut(s) 93, 450
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 814
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 235
BsuRI GGCC 3 cut(s) 496, 806, 830
BtgI CCRYGG 2 cut(s) 384, 923
BtgZI GCGATG 3 cut(s) 179, 196, 728
BtsCI GGATG 4 cut(s) 172, 249, 429, 1027
BtsIMutI CAGTG 1 cut(s) 859
Cac8I GCNNGC 3 cut(s) 690, 749, 1022
CaiI CAGNNNCTG 2 cut(s) 913, 997
CciI TCATGA 1 cut(s) 931
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 3 cut(s) 299, 1045, 1081
Cfr13I GGNCC 2 cut(s) 667, 994
CseI GACGC 1 cut(s) 305
CsiI ACCWGGT 2 cut(s) 912, 1154
Csp6I GTAC 6 cut(s) 115, 217, 490, 549, 604, 700
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 7 cut(s) 367, 601, 609, 685, 748, 924, 932
CviQI GTAC 6 cut(s) 115, 217, 490, 549, 604, 700
DdeI CTNAG 3 cut(s) 235, 255, 998
DpnI GATC 5 cut(s) 24, 141, 573, 734, 795
DpnII GATC 5 cut(s) 22, 139, 571, 732, 793
DraIII CACNNNGTG 1 cut(s) 1158
DriI GACNNNNNGTC 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 2 cut(s) 156, 1133
Eam1105I GACNNNNNGTC 1 cut(s) 387
EarI CTCTTC 2 cut(s) 156, 1133
EciI GGCGGA 1 cut(s) 981
Eco130I CCWWGG 2 cut(s) 462, 923
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 2 cut(s) 374, 1029
Eco47I GGWCC 2 cut(s) 667, 994
Eco57I CTGAAG 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 235
EcoNI CCTNNNNNAGG 1 cut(s) 1001
EcoO109I RGGNCCY 1 cut(s) 994
EcoRII CCWGG 4 cut(s) 432, 912, 1030, 1154
EcoT14I CCWWGG 2 cut(s) 462, 923
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 2 cut(s) 462, 923
FaeI CATG 7 cut(s) 370, 604, 612, 688, 751, 927, 935
FatI CATG 7 cut(s) 366, 600, 608, 684, 747, 923, 931
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 5 cut(s) 191, 591, 752, 908, 1121
FokI GGATG 4 cut(s) 179, 256, 436, 1014
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 5 cut(s) 191, 591, 752, 908, 1121
FspBI CTAG 1 cut(s) 516
GlaI GCGC 1 cut(s) 81
GluI GCNGC 5 cut(s) 191, 591, 752, 908, 1121
GsuI CTGGAG 2 cut(s) 460, 1053
HaeIII GGCC 3 cut(s) 496, 806, 830
HapII CCGG 5 cut(s) 143, 300, 756, 1046, 1082
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 7 cut(s) 370, 604, 612, 688, 751, 927, 935
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 3 cut(s) 50, 184, 1149
HpaII CCGG 5 cut(s) 143, 300, 756, 1046, 1082
HphI GGTGA 3 cut(s) 283, 374, 1144
Hpy166II GTNNAC 3 cut(s) 283, 682, 838
Hpy188I TCNGA 9 cut(s) 67, 76, 183, 205, 243, 321, 545, 798, 1148
Hpy8I GTNNAC 3 cut(s) 283, 682, 838
Hpy99I CGWCG 2 cut(s) 224, 299
HpyAV CCTTC 2 cut(s) 757, 761
HpyCH4III ACNGT 2 cut(s) 385, 863
HpyCH4IV ACGT 2 cut(s) 117, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 748, 863
HpyF3I CTNAG 3 cut(s) 235, 255, 998
HpySE526I ACGT 2 cut(s) 117, 279
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 7 cut(s) 370, 604, 612, 688, 751, 927, 935
HspAI GCGC 1 cut(s) 80
Kpn2I TCCGGA 1 cut(s) 142
Kzo9I GATC 5 cut(s) 22, 139, 571, 732, 793
LmnI GCTCC 5 cut(s) 148, 175, 479, 871, 946
Lsp1109I GCAGC 5 cut(s) 177, 602, 738, 919, 1132
LweI GCATC 4 cut(s) 67, 202, 234, 751
MabI ACCWGGT 2 cut(s) 912, 1154
MaeI CTAG 1 cut(s) 516
MaeII ACGT 2 cut(s) 117, 279
MaeIII GTNAC 4 cut(s) 362, 1089, 1125, 1150
MalI GATC 5 cut(s) 24, 141, 573, 734, 795
MboI GATC 5 cut(s) 22, 139, 571, 732, 793
MboII GAAGA 8 cut(s) 98, 173, 439, 450, 581, 625, 830, 1150
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 234, 868
MluCI AATT 2 cut(s) 11, 555
MlyI GAGTC 1 cut(s) 1158
MmeI TCCRAC 3 cut(s) 90, 221, 821
MroI TCCGGA 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 1142
MslI CAYNNNNRTG 2 cut(s) 75, 812
MspA1I CMGCKG 1 cut(s) 1123
MspI CCGG 5 cut(s) 143, 300, 756, 1046, 1082
MspR9I CCNGG 5 cut(s) 434, 756, 914, 1032, 1156
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 4 cut(s) 434, 914, 1032, 1156
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 748, 863
NciI CCSGG 1 cut(s) 756
NcoI CCATGG 1 cut(s) 923
NdeII GATC 5 cut(s) 22, 139, 571, 732, 793
NlaIII CATG 7 cut(s) 370, 604, 612, 688, 751, 927, 935
NlaIV GGNNCC 1 cut(s) 141
NmeAIII GCCGAG 1 cut(s) 782
NmuCI GTSAC 3 cut(s) 362, 1089, 1150
NspI RCATGY 3 cut(s) 370, 688, 751
PaeI GCATGC 1 cut(s) 751
PagI TCATGA 1 cut(s) 931
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 571
PctI GAATGC 1 cut(s) 646
PdmI GAANNNNTTC 1 cut(s) 1142
PfeI GAWTC 2 cut(s) 50, 184
Pfl23II CGTACG 1 cut(s) 216
PfoI TCCNGGA 1 cut(s) 1030
PkrI GCNGC 5 cut(s) 192, 592, 753, 909, 1122
PleI GAGTC 1 cut(s) 1157
PpsI GAGTC 1 cut(s) 1157
Ppu21I YACGTR 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 994
Psp5II RGGWCCY 1 cut(s) 994
Psp6I CCWGG 4 cut(s) 432, 912, 1030, 1154
PspGI CCWGG 4 cut(s) 432, 912, 1030, 1154
PspLI CGTACG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 2 cut(s) 667, 994
PspPPI RGGWCCY 1 cut(s) 994
PstNI CAGNNNCTG 2 cut(s) 913, 997
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 1123
RsaI GTAC 6 cut(s) 116, 218, 491, 550, 605, 701
RsaNI GTAC 6 cut(s) 115, 217, 490, 549, 604, 700
RseI CAYNNNNRTG 2 cut(s) 75, 812
SatI GCNGC 5 cut(s) 191, 591, 752, 908, 1121
Sau3AI GATC 5 cut(s) 22, 139, 571, 732, 793
Sau96I GGNCC 2 cut(s) 667, 994
ScaI AGTACT 2 cut(s) 491, 701
SchI GAGTC 1 cut(s) 1158
ScrFI CCNGG 5 cut(s) 434, 756, 914, 1032, 1156
SduI GDGCHC 2 cut(s) 234, 868
SexAI ACCWGGT 2 cut(s) 912, 1154
SfaNI GCATC 4 cut(s) 67, 202, 234, 751
SinI GGWCC 2 cut(s) 667, 994
SmiMI CAYNNNNRTG 2 cut(s) 75, 812
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
SphI GCATGC 1 cut(s) 751
Sse9I AATT 2 cut(s) 11, 555
SsiI CCGC 2 cut(s) 40, 966
SspI AATATT 2 cut(s) 157, 1074
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 5 cut(s) 432, 754, 912, 1030, 1154
StyI CCWWGG 2 cut(s) 462, 923
TaaI ACNGT 2 cut(s) 385, 863
TaiI ACGT 2 cut(s) 120, 282
TaqI TCGA 7 cut(s) 48, 391, 444, 565, 574, 785, 879
TasI AATT 2 cut(s) 11, 555
TatI WGTACW 2 cut(s) 489, 699
TfiI GAWTC 2 cut(s) 50, 184
TscAI CASTG 1 cut(s) 866
TseFI GTSAC 3 cut(s) 362, 1089, 1150
TseI GCWGC 5 cut(s) 190, 590, 751, 907, 1120
Tsp45I GTSAC 3 cut(s) 362, 1089, 1150
TspDTI ATGAA 5 cut(s) 359, 388, 440, 920, 1016
TspGWI ACGGA 2 cut(s) 680, 879
TspRI CASTG 1 cut(s) 866
VpaK11BI GGWCC 2 cut(s) 667, 994
XagI CCTNNNNNAGG 1 cut(s) 1001
XceI RCATGY 3 cut(s) 370, 688, 751
XmnI GAANNNNTTC 1 cut(s) 1142
XspI CTAG 1 cut(s) 516
ZrmI AGTACT 2 cut(s) 491, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.