Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0019878

Physical Location & Seq

Genomic Coordinates Reverse (-)

78024087 .. 78024695

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCGACGGCCAGCCACCGGTGAATATAAAGAAGCAAGCAACGTCGGAGATCTGCAACATATGCTGGGAAGAATTGCAGGAAGTGAACCGTGTCAAGGAGATGCCTAAGTGCAAGCACATGTTTCACGTTCACTGTATCAACGCTTGGCTGGCAAAGAATGCTTGCTGCCCACTGTGCCGGAGATTCGCTGTTGTGCCGGACCTCATCTCCATACTTGTTCAGGAGTACGAAGATGATCATGATGATGATGGTCCTTATGTTAGCATTCATGACCTACTAATGGAGGATGATGATGAGACAGATGATATCATCCCCATACTCATACCAGATCATGAAAATGGTGTTGATCCTATAGGTCTTGGAAATGTTGATAACGCTGAAGATGTATTAGTGGGTTTAGTAGAGGACCATATGAGGGACTATATTCCTATACTCGTGACATATCATCATGACGATGGTCTTGATCCTATGAGTCTGGGAAATGATGATGACTTTGATATGGGATTGGACCAAGAAGAGGATGCATGCATTGAGAGCTTGGTATTTTCGTCGTCTGACGATGACTGGTACGGACAAGACGACACCGAAACTCAAAATTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

203

Amino Acids

22.87

Weight (kDa)

4.05

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	10 - 61	2.7e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	19 - 61	5.7e-11	Ring finger domain
zf-RING_11	PF17123	19 - 47	8e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	19 - 60	1.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019878)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0168281
rosa_laevigata	RLG00000021761
rosa_multiflora	Rmu_sc0003354.1_g000006
rosa_roxburghii	Rroxscaffold_2G00083220
rosa_rugosa	Rorug02G0532400
rosa_samantha	Rh2BG614700 Rh2CG582200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	344, 461
AcoI	YGGCCR	2 cut(s)	3, 10
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	2 cut(s)	230, 572
AfiI	CCNNNNNNNGG	5 cut(s)	19, 97, 283, 418, 520
AflIII	ACRYGT	1 cut(s)	120
AgeI	ACCGGT	1 cut(s)	19
AluBI	AGCT	1 cut(s)	540
AluI	AGCT	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	2 cut(s)	344, 461
AoxI	GGCC	2 cut(s)	3, 10
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	598
AsiGI	ACCGGT	1 cut(s)	19
AspS9I	GGNCC	4 cut(s)	202, 254, 409, 511
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	4 cut(s)	202, 254, 409, 511
BauI	CACGAG	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	245, 452
BceAI	ACGGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	354
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme18I	GGWCC	4 cut(s)	202, 254, 409, 511
BmgT120I	GGNCC	4 cut(s)	202, 254, 409, 511
BmsI	GCATC	2 cut(s)	93, 514
BoxI	GACNNNNGTC	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 97, 283, 418, 520
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	572
BseGI	GGATG	3 cut(s)	295, 312, 529
BseLI	CCNNNNNNNGG	5 cut(s)	19, 97, 283, 418, 520
BseNI	ACTGG	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	66
BshFI	GGCC	2 cut(s)	5, 12
BshTI	ACCGGT	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	20, 181, 200
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	5 cut(s)	19, 97, 283, 418, 520
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	2 cut(s)	166, 267
BsnI	GGCC	2 cut(s)	5, 12
Bsp143I	GATC	5 cut(s)	51, 238, 331, 349, 466
BspANI	GGCC	2 cut(s)	5, 12
BspHI	TCATGA	4 cut(s)	241, 271, 334, 451
BspPI	GGATC	2 cut(s)	344, 461
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	572
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	5 cut(s)	51, 238, 331, 349, 466
BssSI	CACGAG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	437
Bst4CI	ACNGT	3 cut(s)	92, 137, 177
Bst6I	CTCTTC	1 cut(s)	513
BstAPI	GCANNNNNTGC	2 cut(s)	63, 161
BstC8I	GCNNGC	6 cut(s)	14, 39, 116, 153, 166, 529
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	295, 312, 529
BstKTI	GATC	5 cut(s)	54, 241, 334, 352, 469
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	5 cut(s)	51, 238, 331, 349, 466
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 152, 161, 177, 537
BstNSI	RCATGY	2 cut(s)	124, 531
BstPAI	GACNNNNGTC	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	5, 12
BtsCI	GGATG	3 cut(s)	295, 312, 529
BtsIMutI	CAGTG	2 cut(s)	133, 173
Cac8I	GCNNGC	6 cut(s)	14, 39, 116, 153, 166, 529
CciI	TCATGA	4 cut(s)	241, 271, 334, 451
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	4 cut(s)	202, 254, 409, 511
Csp6I	GTAC	2 cut(s)	229, 571
CspAI	ACCGGT	1 cut(s)	19
CviAII	CATG	6 cut(s)	121, 242, 272, 335, 452, 528
CviJI	RGCY	5 cut(s)	5, 12, 16, 151, 540
CviKI_1	RGCY	5 cut(s)	5, 12, 16, 151, 540
CviQI	GTAC	2 cut(s)	229, 571
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	5 cut(s)	53, 240, 333, 351, 468
DpnII	GATC	5 cut(s)	51, 238, 331, 349, 466
EaeI	YGGCCR	2 cut(s)	3, 10
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	4 cut(s)	202, 254, 409, 511
Eco57I	CTGAAG	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	310
EcoT22I	ATGCAT	2 cut(s)	529, 533
FaeI	CATG	6 cut(s)	124, 245, 275, 338, 455, 531
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	6 cut(s)	120, 241, 271, 334, 451, 527
FauNDI	CATATG	2 cut(s)	62, 414
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	3 cut(s)	299, 302, 536
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
GsaI	CCCAGC	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	5, 12
HapII	CCGG	3 cut(s)	20, 181, 200
Hin1II	CATG	6 cut(s)	124, 245, 275, 338, 455, 531
HinfI	GANTC	2 cut(s)	186, 475
HpaII	CCGG	3 cut(s)	20, 181, 200
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	88, 133
Hpy188I	TCNGA	2 cut(s)	49, 559
Hpy188III	TCNNGA	7 cut(s)	224, 242, 272, 335, 439, 452, 464
Hpy8I	GTNNAC	2 cut(s)	88, 133
Hpy99I	CGWCG	3 cut(s)	11, 49, 556
HpyCH4III	ACNGT	3 cut(s)	92, 137, 177
HpyCH4IV	ACGT	2 cut(s)	44, 129
HpyCH4V	TGCA	5 cut(s)	57, 79, 114, 527, 531
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 152, 161, 177, 537
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	44, 129
Hsp92II	CATG	6 cut(s)	124, 245, 275, 338, 455, 531
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	51, 238, 331, 349, 466
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	2 cut(s)	93, 514
MaeII	ACGT	2 cut(s)	44, 129
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	5 cut(s)	53, 240, 333, 351, 468
MboI	GATC	5 cut(s)	51, 238, 331, 349, 466
MboII	GAAGA	4 cut(s)	83, 245, 395, 530
MflI	RGATCY	1 cut(s)	51
MluCI	AATT	2 cut(s)	74, 598
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	5 cut(s)	215, 280, 400, 411, 514
Mph1103I	ATGCAT	2 cut(s)	529, 533
MslI	CAYNNNNRTG	3 cut(s)	246, 339, 456
MspI	CCGG	3 cut(s)	20, 181, 200
Mva1269I	GAATGC	2 cut(s)	166, 267
MwoI	GCNNNNNNNGC	5 cut(s)	63, 152, 161, 177, 537
NdeI	CATATG	2 cut(s)	62, 414
NdeII	GATC	5 cut(s)	51, 238, 331, 349, 466
NlaIII	CATG	6 cut(s)	124, 245, 275, 338, 455, 531
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	2 cut(s)	529, 533
NspI	RCATGY	2 cut(s)	124, 531
PaeI	GCATGC	1 cut(s)	531
PagI	TCATGA	4 cut(s)	241, 271, 334, 451
PciI	ACATGT	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PctI	GAATGC	2 cut(s)	166, 267
PfeI	GAWTC	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
PscI	ACATGT	1 cut(s)	120
PshAI	GACNNNNGTC	1 cut(s)	459
PspFI	CCCAGC	1 cut(s)	66
PspPI	GGNCC	4 cut(s)	202, 254, 409, 511
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	2 cut(s)	230, 572
RsaNI	GTAC	2 cut(s)	229, 571
RseI	CAYNNNNRTG	3 cut(s)	246, 339, 456
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	5 cut(s)	51, 238, 331, 349, 466
Sau96I	GGNCC	4 cut(s)	202, 254, 409, 511
SchI	GAGTC	1 cut(s)	484
SetI	ASST	6 cut(s)	47, 132, 207, 279, 361, 542
SfaNI	GCATC	2 cut(s)	93, 514
SfcI	CTRYAG	1 cut(s)	354
SgrAI	CRCCGGYG	1 cut(s)	19
SinI	GGWCC	4 cut(s)	202, 254, 409, 511
SmiMI	CAYNNNNRTG	3 cut(s)	246, 339, 456
SphI	GCATGC	1 cut(s)	531
Sse9I	AATT	2 cut(s)	74, 598
TaaI	ACNGT	3 cut(s)	92, 137, 177
TaiI	ACGT	2 cut(s)	47, 132
TasI	AATT	2 cut(s)	74, 598
TfiI	GAWTC	1 cut(s)	186
TscAI	CASTG	2 cut(s)	140, 180
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	260, 351
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	2 cut(s)	140, 180
VpaK11BI	GGWCC	4 cut(s)	202, 254, 409, 511
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	2 cut(s)	124, 531
Zsp2I	ATGCAT	2 cut(s)	529, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.