RING-like zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0168281 |
| rosa_laevigata | RLG00000021761 |
| rosa_multiflora | Rmu_sc0003354.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00083220 |
| rosa_rugosa | Rorug02G0532400 |
| rosa_samantha | Rh2BG614700 Rh2CG582200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 144 |
| AclWI | GGATC | 1 cut(s) | 440 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 1 cut(s) | 381 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 19, 97, 262, 499 |
| AflIII | ACRYGT | 1 cut(s) | 120 |
| AgsI | TTSAA | 1 cut(s) | 329 |
| AlwI | GGATC | 1 cut(s) | 440 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 168 |
| AspS9I | GGNCC | 3 cut(s) | 202, 233, 490 |
| AsuHPI | GGTGA | 1 cut(s) | 34 |
| AvaII | GGWCC | 3 cut(s) | 202, 233, 490 |
| BauI | CACGAG | 1 cut(s) | 416 |
| BbvI | GCAGC | 1 cut(s) | 155 |
| BccI | CCATC | 2 cut(s) | 224, 431 |
| BfmI | CTRYAG | 1 cut(s) | 333 |
| BglII | AGATCT | 1 cut(s) | 51 |
| BisI | GCNGC | 1 cut(s) | 169 |
| BlsI | GCNGC | 1 cut(s) | 170 |
| Bme18I | GGWCC | 3 cut(s) | 202, 233, 490 |
| BmgT120I | GGNCC | 3 cut(s) | 202, 233, 490 |
| BmsI | GCATC | 2 cut(s) | 93, 493 |
| BoxI | GACNNNNGTC | 1 cut(s) | 438 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 194, 224 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 19, 97, 262, 499 |
| BseGI | GGATG | 4 cut(s) | 274, 291, 303, 508 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 19, 97, 262, 499 |
| BseRI | GAGGAG | 1 cut(s) | 401 |
| BseXI | GCAGC | 1 cut(s) | 155 |
| BseYI | CCCAGC | 1 cut(s) | 66 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiSI | CCGG | 1 cut(s) | 200 |
| BslFI | GGGAC | 1 cut(s) | 413 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 19, 97, 262, 499 |
| BsmFI | GGGAC | 1 cut(s) | 413 |
| BsmI | GAATGC | 2 cut(s) | 166, 246 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp143I | GATC | 3 cut(s) | 51, 310, 445 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspHI | TCATGA | 4 cut(s) | 223, 250, 313, 430 |
| BspPI | GGATC | 1 cut(s) | 440 |
| BssMI | GATC | 3 cut(s) | 51, 310, 445 |
| BssSI | CACGAG | 1 cut(s) | 416 |
| Bst2BI | CACGAG | 1 cut(s) | 416 |
| Bst4CI | ACNGT | 3 cut(s) | 92, 137, 177 |
| Bst6I | CTCTTC | 1 cut(s) | 492 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 63 |
| BstC8I | GCNNGC | 3 cut(s) | 14, 116, 166 |
| BstDEI | CTNAG | 1 cut(s) | 108 |
| BstF5I | GGATG | 4 cut(s) | 274, 291, 303, 508 |
| BstKTI | GATC | 3 cut(s) | 54, 313, 448 |
| BstMBI | GATC | 3 cut(s) | 51, 310, 445 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 63, 177 |
| BstNSI | RCATGY | 2 cut(s) | 124, 514 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 438 |
| BstSFI | CTRYAG | 1 cut(s) | 333 |
| BstV1I | GCAGC | 1 cut(s) | 155 |
| BstX2I | RGATCY | 1 cut(s) | 51 |
| BstYI | RGATCY | 1 cut(s) | 51 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtsCI | GGATG | 4 cut(s) | 274, 291, 303, 508 |
| BtsIMutI | CAGTG | 2 cut(s) | 133, 173 |
| Cac8I | GCNNGC | 3 cut(s) | 14, 116, 166 |
| CciI | TCATGA | 4 cut(s) | 223, 250, 313, 430 |
| Cfr13I | GGNCC | 3 cut(s) | 202, 233, 490 |
| CviAII | CATG | 6 cut(s) | 121, 224, 251, 314, 431, 511 |
| CviJI | RGCY | 3 cut(s) | 5, 16, 151 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 16, 151 |
| DdeI | CTNAG | 1 cut(s) | 108 |
| DpnI | GATC | 3 cut(s) | 53, 312, 447 |
| DpnII | GATC | 3 cut(s) | 51, 310, 445 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 492 |
| EarI | CTCTTC | 1 cut(s) | 492 |
| Eco32I | GATATC | 1 cut(s) | 289 |
| Eco47I | GGWCC | 3 cut(s) | 202, 233, 490 |
| Eco57I | CTGAAG | 1 cut(s) | 381 |
| EcoRV | GATATC | 1 cut(s) | 289 |
| EcoT22I | ATGCAT | 2 cut(s) | 508, 516 |
| FaeI | CATG | 6 cut(s) | 124, 227, 254, 317, 434, 514 |
| FaqI | GGGAC | 1 cut(s) | 413 |
| FatI | CATG | 6 cut(s) | 120, 223, 250, 313, 430, 510 |
| FauNDI | CATATG | 2 cut(s) | 62, 393 |
| Fnu4HI | GCNGC | 1 cut(s) | 169 |
| FokI | GGATG | 4 cut(s) | 278, 281, 290, 515 |
| Fsp4HI | GCNGC | 1 cut(s) | 169 |
| GluI | GCNGC | 1 cut(s) | 169 |
| GsaI | CCCAGC | 1 cut(s) | 70 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 200 |
| Hin1II | CATG | 6 cut(s) | 124, 227, 254, 317, 434, 514 |
| HinfI | GANTC | 2 cut(s) | 186, 454 |
| HpaII | CCGG | 1 cut(s) | 200 |
| HphI | GGTGA | 1 cut(s) | 34 |
| Hpy166II | GTNNAC | 1 cut(s) | 88 |
| Hpy188I | TCNGA | 1 cut(s) | 49 |
| Hpy188III | TCNNGA | 6 cut(s) | 224, 251, 314, 418, 431, 443 |
| Hpy8I | GTNNAC | 1 cut(s) | 88 |
| HpyCH4III | ACNGT | 3 cut(s) | 92, 137, 177 |
| HpyCH4IV | ACGT | 1 cut(s) | 144 |
| HpyCH4V | TGCA | 5 cut(s) | 57, 79, 114, 506, 514 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 63, 177 |
| HpyF3I | CTNAG | 1 cut(s) | 108 |
| HpySE526I | ACGT | 1 cut(s) | 144 |
| Hsp92II | CATG | 6 cut(s) | 124, 227, 254, 317, 434, 514 |
| Kzo9I | GATC | 3 cut(s) | 51, 310, 445 |
| LmnI | GCTCC | 1 cut(s) | 388 |
| Lsp1109I | GCAGC | 1 cut(s) | 155 |
| LweI | GCATC | 2 cut(s) | 93, 493 |
| MaeII | ACGT | 1 cut(s) | 144 |
| MaeIII | GTNAC | 1 cut(s) | 418 |
| MalI | GATC | 3 cut(s) | 53, 312, 447 |
| MboI | GATC | 3 cut(s) | 51, 310, 445 |
| MboII | GAAGA | 3 cut(s) | 83, 374, 509 |
| MflI | RGATCY | 1 cut(s) | 51 |
| MluCI | AATT | 1 cut(s) | 74 |
| MlyI | GAGTC | 1 cut(s) | 463 |
| MmeI | TCCRAC | 1 cut(s) | 27 |
| MnlI | CCTC | 5 cut(s) | 215, 259, 379, 390, 493 |
| Mph1103I | ATGCAT | 2 cut(s) | 508, 516 |
| MslI | CAYNNNNRTG | 3 cut(s) | 228, 318, 435 |
| MspI | CCGG | 1 cut(s) | 200 |
| Mva1269I | GAATGC | 2 cut(s) | 166, 246 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 63, 177 |
| NdeI | CATATG | 2 cut(s) | 62, 393 |
| NdeII | GATC | 3 cut(s) | 51, 310, 445 |
| NlaIII | CATG | 6 cut(s) | 124, 227, 254, 317, 434, 514 |
| NmuCI | GTSAC | 1 cut(s) | 418 |
| NsiI | ATGCAT | 2 cut(s) | 508, 516 |
| NspI | RCATGY | 2 cut(s) | 124, 514 |
| PagI | TCATGA | 4 cut(s) | 223, 250, 313, 430 |
| PciI | ACATGT | 1 cut(s) | 120 |
| PctI | GAATGC | 2 cut(s) | 166, 246 |
| PfeI | GAWTC | 1 cut(s) | 186 |
| PkrI | GCNGC | 1 cut(s) | 170 |
| PleI | GAGTC | 1 cut(s) | 462 |
| PpsI | GAGTC | 1 cut(s) | 462 |
| PscI | ACATGT | 1 cut(s) | 120 |
| PshAI | GACNNNNGTC | 1 cut(s) | 438 |
| Psp1406I | AACGTT | 1 cut(s) | 144 |
| PspFI | CCCAGC | 1 cut(s) | 66 |
| PspPI | GGNCC | 3 cut(s) | 202, 233, 490 |
| PsuI | RGATCY | 1 cut(s) | 51 |
| RseI | CAYNNNNRTG | 3 cut(s) | 228, 318, 435 |
| SatI | GCNGC | 1 cut(s) | 169 |
| Sau3AI | GATC | 3 cut(s) | 51, 310, 445 |
| Sau96I | GGNCC | 3 cut(s) | 202, 233, 490 |
| SchI | GAGTC | 1 cut(s) | 463 |
| SetI | ASST | 5 cut(s) | 24, 147, 207, 258, 340 |
| SfaNI | GCATC | 2 cut(s) | 93, 493 |
| SfcI | CTRYAG | 1 cut(s) | 333 |
| SinI | GGWCC | 3 cut(s) | 202, 233, 490 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 228, 318, 435 |
| Sse9I | AATT | 1 cut(s) | 74 |
| TaaI | ACNGT | 3 cut(s) | 92, 137, 177 |
| TaiI | ACGT | 1 cut(s) | 147 |
| TasI | AATT | 1 cut(s) | 74 |
| TfiI | GAWTC | 1 cut(s) | 186 |
| TscAI | CASTG | 2 cut(s) | 140, 180 |
| TseFI | GTSAC | 1 cut(s) | 418 |
| TseI | GCWGC | 1 cut(s) | 168 |
| Tsp45I | GTSAC | 1 cut(s) | 418 |
| TspDTI | ATGAA | 3 cut(s) | 212, 239, 330 |
| TspRI | CASTG | 2 cut(s) | 140, 180 |
| VpaK11BI | GGWCC | 3 cut(s) | 202, 233, 490 |
| XceI | RCATGY | 2 cut(s) | 124, 514 |
| Zsp2I | ATGCAT | 2 cut(s) | 508, 516 |