RLG00000024610

F-box protein SKIP14-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
37441671 .. 37444358
2688 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024610

Sequence Viewer

Length: 372 bp
ATGGCTTTGAATCTGTCTCGTGGCTTAGTTTTGTCCAAGTATCCTTCCCCAGAGCATAGTTTGTGTTCTTTTGTTAGGTGCTCTAATGGGTATGTGAAGGATCAATGTAAAGAGAAGAGTTTGGATGGTGATGCATCGAGTTTGAATTCGGATTTGAAGAAGAGTACCCATTACAAGGGTGAATTAGGTGGCTATTGTGAGCCTTCTACTGATGATATTCTTGATAGGCTGCATGTTGATCCTTTTGGGATGGATATGAGGTCTACTTTTATAGCCATTTGTGGTTGGCTTGAGGATTTTGAGAAGGCGCGAGCTGGATCATCTATATCACAAGACCTTCTCCATGAAAACAACATCCTTAACCCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

13.64

Weight (kDa)

5.25

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025368)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024610
rosa_multiflora Rmu_sc0004088.1_g000002 Rmu_ssc0000381.1_g000014

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 263
AccII CGCG 1 cut(s) 310
AclWI GGATC 3 cut(s) 108, 233, 325
AcsI RAATTY 1 cut(s) 145
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 3 cut(s) 10, 145, 157
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 3 cut(s) 108, 233, 325
ApeKI GCWGC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 145
AspLEI GCGC 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 140, 191
BauI CACGAG 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 119, 244
BciVI GTATCC 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 21
BfuI GTATCC 1 cut(s) 51
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
BmsI GCATC 2 cut(s) 121, 143
BpuEI CTTGAG 1 cut(s) 311
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseGI GGATG 3 cut(s) 130, 255, 354
BseLI CCNNNNNNNGG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 3 cut(s) 100, 238, 317
BspFNI CGCG 1 cut(s) 310
BspPI GGATC 3 cut(s) 108, 233, 325
BssMI GATC 3 cut(s) 100, 238, 317
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 110, 155
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 25
BstF5I GGATG 3 cut(s) 130, 255, 354
BstFNI CGCG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 3 cut(s) 103, 241, 320
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 3 cut(s) 100, 238, 317
BstNSI RCATGY 1 cut(s) 236
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 216
BsuI GTATCC 1 cut(s) 51
BtsCI GGATG 3 cut(s) 130, 255, 354
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 165
CviAII CATG 2 cut(s) 233, 344
CviJI RGCY 8 cut(s) 5, 24, 192, 202, 229, 275, 289, 314
CviKI_1 RGCY 8 cut(s) 5, 24, 192, 202, 229, 275, 289, 314
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 25
DpnI GATC 3 cut(s) 102, 240, 319
DpnII GATC 3 cut(s) 100, 238, 317
Eam1104I CTCTTC 2 cut(s) 110, 155
EarI CTCTTC 2 cut(s) 110, 155
EcoRI GAATTC 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 136
FaeI CATG 2 cut(s) 236, 347
FaiI YATR 7 cut(s) 57, 93, 234, 257, 272, 326, 345
FatI CATG 2 cut(s) 232, 343
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 3 cut(s) 137, 262, 341
Fsp4HI GCNGC 1 cut(s) 230
GlaI GCGC 1 cut(s) 309
GluI GCNGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 310
Hin1II CATG 2 cut(s) 236, 347
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 1 cut(s) 10
HphI GGTGA 2 cut(s) 140, 191
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 264
HpyAV CCTTC 5 cut(s) 54, 91, 213, 298, 347
HpyCH4V TGCA 2 cut(s) 134, 232
HpyF3I CTNAG 1 cut(s) 25
Hsp92II CATG 2 cut(s) 236, 347
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 3 cut(s) 100, 238, 317
LpnPI CCDG 2 cut(s) 63, 300
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 2 cut(s) 121, 143
MalI GATC 3 cut(s) 102, 240, 319
MboI GATC 3 cut(s) 100, 238, 317
MboII GAAGA 3 cut(s) 127, 169, 172
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 2 cut(s) 145, 182
MnlI CCTC 2 cut(s) 252, 286
Mph1103I ATGCAT 1 cut(s) 136
MseI TTAA 1 cut(s) 360
MvnI CGCG 1 cut(s) 310
NdeII GATC 3 cut(s) 100, 238, 317
NlaIII CATG 2 cut(s) 236, 347
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 1 cut(s) 236
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 231
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 1 cut(s) 230
Sau3AI GATC 3 cut(s) 100, 238, 317
SduI GDGCHC 1 cut(s) 83
SetI ASST 5 cut(s) 80, 190, 263, 316, 339
SfaNI GCATC 2 cut(s) 121, 143
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 145, 182
TaqI TCGA 1 cut(s) 137
TasI AATT 2 cut(s) 145, 182
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TseI GCWGC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 360
XapI RAATTY 1 cut(s) 145
XceI RCATGY 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.