Rmu_sc0004088.1_g000002

F-box protein SKIP14-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004088.1
OG0025368
Physical Location & Seq
Forward (+)
14618 .. 14911
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004088.1_g000002.1.cds

Sequence Viewer

Length: 294 bp
atgagggatcaatgtaaagagaagagttcggatggtgatgcatcgagttcgaattcgaatttgaagaagagtacccattacaagggtgaattgggtggctattatgagccttctactgatgatattcttgataggttgcctgttaatccttttggaatggatatgaggtctacttttacggccatttgtgcttggctagaggattttgagaaggggtgtgagtcttatgggtttggggaagatgaaagagaatccaaattgggggacaaagctctgtacatcgatcctgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

97

Amino Acids

10.88

Weight (kDa)

4.52

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025368)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024610
rosa_multiflora Rmu_sc0004088.1_g000002 Rmu_ssc0000381.1_g000014

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 170
AclWI GGATC 2 cut(s) 15, 278
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 2 cut(s) 52, 58
AfaI GTAC 2 cut(s) 73, 278
AfiI CCNNNNNNNGG 2 cut(s) 82, 261
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 2 cut(s) 15, 278
AoxI GGCC 1 cut(s) 180
ApoI RAATTY 2 cut(s) 52, 58
AsuHPI GGTGA 2 cut(s) 47, 98
AsuII TTCGAA 2 cut(s) 50, 56
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BfaI CTAG 1 cut(s) 197
BmsI GCATC 2 cut(s) 28, 50
Bpu14I TTCGAA 2 cut(s) 50, 56
Bsa29I ATCGAT 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 261
BseCI ATCGAT 1 cut(s) 282
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 82, 261
BshFI GGCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 282
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 82, 261
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 182
Bsp119I TTCGAA 2 cut(s) 50, 56
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 2 cut(s) 7, 283
BspANI GGCC 1 cut(s) 182
BspDI ATCGAT 1 cut(s) 282
BspPI GGATC 2 cut(s) 15, 278
BspT104I TTCGAA 2 cut(s) 50, 56
BsrGI TGTACA 1 cut(s) 276
BssMI GATC 2 cut(s) 7, 283
Bst6I CTCTTC 2 cut(s) 17, 62
BstAUI TGTACA 1 cut(s) 276
BstBI TTCGAA 2 cut(s) 50, 56
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 2 cut(s) 10, 286
BstMBI GATC 2 cut(s) 7, 283
BstMWI GCNNNNNNNGC 1 cut(s) 188
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 282
Csp6I GTAC 2 cut(s) 72, 277
CviJI RGCY 5 cut(s) 99, 109, 182, 196, 272
CviKI_1 RGCY 5 cut(s) 99, 109, 182, 196, 272
CviQI GTAC 2 cut(s) 72, 277
DpnI GATC 2 cut(s) 9, 285
DpnII GATC 2 cut(s) 7, 283
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 17, 62
EarI CTCTTC 2 cut(s) 17, 62
EcoRI GAATTC 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 43
FaiI YATR 3 cut(s) 105, 164, 228
FaqI GGGAC 1 cut(s) 278
FblI GTMKAC 1 cut(s) 170
FokI GGATG 1 cut(s) 44
FspBI CTAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 182
HinfI GANTC 2 cut(s) 221, 251
HphI GGTGA 2 cut(s) 47, 98
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 120, 205
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 7, 283
LpnPI CCDG 1 cut(s) 153
LweI GCATC 2 cut(s) 28, 50
MaeI CTAG 1 cut(s) 197
MalI GATC 2 cut(s) 9, 285
MboI GATC 2 cut(s) 7, 283
MboII GAAGA 4 cut(s) 34, 76, 79, 251
MluCI AATT 4 cut(s) 52, 58, 89, 257
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 2 cut(s) 159, 193
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 2 cut(s) 144, 292
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 2 cut(s) 7, 283
NsiI ATGCAT 1 cut(s) 43
NspV TTCGAA 2 cut(s) 50, 56
PfeI GAWTC 1 cut(s) 251
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
RsaI GTAC 2 cut(s) 73, 278
RsaNI GTAC 2 cut(s) 72, 277
SaqAI TTAA 2 cut(s) 144, 292
Sau3AI GATC 2 cut(s) 7, 283
SchI GAGTC 1 cut(s) 230
SetI ASST 3 cut(s) 137, 170, 274
SfaNI GCATC 2 cut(s) 28, 50
SfuI TTCGAA 2 cut(s) 50, 56
SgeI CNNG 6 cut(s) 57, 94, 140, 152, 204, 209
Sse9I AATT 4 cut(s) 52, 58, 89, 257
SspMI CTAG 1 cut(s) 197
TaqI TCGA 4 cut(s) 44, 50, 56, 282
TasI AATT 4 cut(s) 52, 58, 89, 257
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 144, 292
Tru9I TTAA 2 cut(s) 144, 292
TspDTI ATGAA 1 cut(s) 258
XapI RAATTY 2 cut(s) 52, 58
XmiI GTMKAC 1 cut(s) 170
XspI CTAG 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.