Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0030820

Physical Location & Seq

Genomic Coordinates Reverse (-)

37492937 .. 37493407

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAACACGGGTCGTGGGTACGCTCGAGTATTCGGCTCCGGAATTGCCCAGAACCGGGAAGGCGAGTACGGGTTCGAATCTGTATGTGTTTGGCACGCTTTTGCTGGAGGTGGTGGTGATGGTGGTGAAGTTGGGGTTGATGTGCTCAGCCCATTGGCCGAGGGCCAGGCCCAGGCCCAGGCCCAATATGAGATTGGTGATGAGGTATTTGGATTGGTGATGAGGTGTTTGGTTGGGATTCCGGAGAAGCTGAAACCGCCTAGTGGGTCCCATGTGGCCGGGTTTGATGACTTTGTGAGCTCGTTTGCGTCGTCTTCTTCGTTTGATAGGATGAGCTGCTACTCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

117

Amino Acids

12.18

Weight (kDa)

4.69

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030820)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000024617
rosa_samantha	Rh7DG106800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	38, 241
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	2 cut(s)	156, 276
AfaI	GTAC	2 cut(s)	20, 68
AfiI	CCNNNNNNNGG	5 cut(s)	54, 55, 172, 178, 263
AjnI	CCWGG	3 cut(s)	165, 171, 177
AluBI	AGCT	3 cut(s)	250, 300, 336
AluI	AGCT	3 cut(s)	250, 300, 336
Alw21I	GWGCWC	2 cut(s)	147, 302
Ama87I	CYCGRG	1 cut(s)	24
Aor13HI	TCCGGA	2 cut(s)	38, 241
AoxI	GGCC	6 cut(s)	156, 163, 168, 174, 180, 276
ApeKI	GCWGC	1 cut(s)	336
AspS9I	GGNCC	5 cut(s)	163, 169, 175, 181, 267
AsuC2I	CCSGG	2 cut(s)	56, 280
AsuHPI	GGTGA	4 cut(s)	128, 137, 209, 229
AsuII	TTCGAA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	147, 302
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	3 cut(s)	167, 173, 179
BcnI	CCSGG	2 cut(s)	56, 280
BfaI	CTAG	1 cut(s)	261
BisI	GCNGC	1 cut(s)	337
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	5 cut(s)	56, 167, 173, 179, 280
Bme18I	GGWCC	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	5 cut(s)	163, 169, 175, 181, 267
BmiI	GGNNCC	3 cut(s)	37, 268, 269
BmrFI	CCNGG	5 cut(s)	56, 167, 173, 179, 280
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	75
BpuMI	CCSGG	2 cut(s)	56, 280
BsaJI	CCNNGG	3 cut(s)	159, 171, 177
BsaWI	WCCGGW	2 cut(s)	38, 241
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 55, 172, 178, 263
BseAI	TCCGGA	2 cut(s)	38, 241
BseBI	CCWGG	3 cut(s)	167, 173, 179
BseDI	CCNNGG	3 cut(s)	159, 171, 177
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	5 cut(s)	54, 55, 172, 178, 263
BseMII	CTCAG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	323
BshFI	GGCC	6 cut(s)	158, 165, 170, 176, 182, 278
BsiHKAI	GWGCWC	2 cut(s)	147, 302
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	4 cut(s)	39, 55, 242, 279
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	5 cut(s)	54, 55, 172, 178, 263
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	6 cut(s)	158, 165, 170, 176, 182, 278
BsoBI	CYCGRG	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	147, 302
Bsp13I	TCCGGA	2 cut(s)	38, 241
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	6 cut(s)	158, 165, 170, 176, 182, 278
BspCNI	CTCAG	1 cut(s)	159
BspEI	TCCGGA	2 cut(s)	38, 241
BspLI	GGNNCC	3 cut(s)	37, 268, 269
BspT104I	TTCGAA	1 cut(s)	75
BssECI	CCNNGG	3 cut(s)	159, 171, 177
Bst2UI	CCWGG	3 cut(s)	167, 173, 179
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	336
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	3 cut(s)	167, 173, 179
BstSCI	CCNGG	5 cut(s)	54, 165, 171, 177, 278
BstV1I	GCAGC	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	306
BsuRI	GGCC	6 cut(s)	158, 165, 170, 176, 182, 278
BtsCI	GGATG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	96
Cfr13I	GGNCC	5 cut(s)	163, 169, 175, 181, 267
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	19, 67
CviAII	CATG	1 cut(s)	272
CviQI	GTAC	2 cut(s)	19, 67
DdeI	CTNAG	1 cut(s)	146
EaeI	YGGCCR	2 cut(s)	156, 276
Ecl136II	GAGCTC	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	3 cut(s)	165, 171, 177
EcoT38I	GRGCYC	1 cut(s)	302
FaeI	CATG	1 cut(s)	275
FaiI	YATR	3 cut(s)	85, 189, 273
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	1 cut(s)	337
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	6 cut(s)	158, 165, 170, 176, 182, 278
HapII	CCGG	4 cut(s)	39, 55, 242, 279
HgaI	GACGC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	275
HinfI	GANTC	2 cut(s)	77, 238
HpaII	CCGG	4 cut(s)	39, 55, 242, 279
HphI	GGTGA	4 cut(s)	128, 137, 209, 229
Hpy188III	TCNNGA	2 cut(s)	39, 242
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	275
KflI	GGGWCCC	1 cut(s)	267
Kpn2I	TCCGGA	2 cut(s)	38, 241
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	261
MboII	GAAGA	2 cut(s)	306, 309
MhlI	GDGCHC	2 cut(s)	147, 302
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	4 cut(s)	101, 154, 196, 216
MroI	TCCGGA	2 cut(s)	38, 241
MspI	CCGG	4 cut(s)	39, 55, 242, 279
MspR9I	CCNGG	5 cut(s)	56, 167, 173, 179, 280
MvaI	CCWGG	3 cut(s)	167, 173, 179
MwoI	GCNNNNNNNGC	1 cut(s)	256
NciI	CCSGG	2 cut(s)	56, 280
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	3 cut(s)	37, 268, 269
NmeAIII	GCCGAG	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	75
PaeR7I	CTCGAG	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	2 cut(s)	308, 317
PfeI	GAWTC	2 cut(s)	77, 238
PkrI	GCNGC	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	165, 171, 177
PspGI	CCWGG	3 cut(s)	165, 171, 177
PspN4I	GGNNCC	3 cut(s)	37, 268, 269
PspPI	GGNCC	5 cut(s)	163, 169, 175, 181, 267
PspPPI	RGGWCCY	1 cut(s)	267
PspXI	VCTCGAGB	1 cut(s)	24
RsaI	GTAC	2 cut(s)	20, 68
RsaNI	GTAC	2 cut(s)	19, 67
SacI	GAGCTC	1 cut(s)	302
SatI	GCNGC	1 cut(s)	337
Sau96I	GGNCC	5 cut(s)	163, 169, 175, 181, 267
ScrFI	CCNGG	5 cut(s)	56, 167, 173, 179, 280
SduI	GDGCHC	2 cut(s)	147, 302
SetI	ASST	6 cut(s)	112, 207, 227, 252, 302, 338
Sfr274I	CTCGAG	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	75
SinI	GGWCC	1 cut(s)	267
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	302
StyD4I	CCNGG	5 cut(s)	54, 165, 171, 177, 278
TaqI	TCGA	2 cut(s)	25, 75
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	77, 238
TseI	GCWGC	1 cut(s)	336
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	24
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.