Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0030820

Physical Location & Seq

Genomic Coordinates Forward (+)

9097931 .. 9098218

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG106800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGTGGTGACTGGTGAGGGTGGTGAAGTTGGGGTTGATGTGCTCGGCCCATGGGCCGAGGGCCAGGCCCAATATGAGATTGGTGATGAGGTATCTGGATGGGGGGAGGCTGAGATTCCGGAGGAGCTGAGACCGCCTAGTGGGTCCCATGTAGCCGGGTTTGATGACTTTGTGAGCTCGTTTGCGTCGTCTTCTTCGTTTGATAGGATGAGCAGCTACTCTAATAGATGGCTTAGAGTAGTGAAAGTTGTGAATATACTCTTCTCGGATATCGGCAAGATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

95

Amino Acids

10.24

Weight (kDa)

4.25

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030820)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000024617
rosa_samantha	Rh7DG106800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	127, 177, 216
AluI	AGCT	3 cut(s)	127, 177, 216
Alw21I	GWGCWC	2 cut(s)	45, 179
Alw26I	GTCTC	1 cut(s)	124
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	4 cut(s)	46, 54, 61, 66
ApeKI	GCWGC	1 cut(s)	213
AspS9I	GGNCC	5 cut(s)	47, 54, 61, 67, 144
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	4 cut(s)	19, 26, 35, 95
AvaII	GGWCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	2 cut(s)	45, 179
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	93, 222
BciT130I	CCWGG	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	65, 157
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	5 cut(s)	47, 54, 61, 67, 144
BmiI	GGNNCC	2 cut(s)	145, 146
BmrFI	CCNGG	2 cut(s)	65, 157
BmsI	GCATC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	50, 57
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	16
BseAI	TCCGGA	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	50, 57
BseGI	GGATG	2 cut(s)	104, 213
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	102, 119
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	4 cut(s)	48, 56, 63, 68
BsiHKAI	GWGCWC	2 cut(s)	45, 179
BsiSI	CCGG	2 cut(s)	119, 156
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	4 cut(s)	48, 56, 63, 68
Bso31I	GGTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	45, 179
Bsp13I	TCCGGA	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	50
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	4 cut(s)	48, 56, 63, 68
BspCNI	CTCAG	2 cut(s)	103, 120
BspEI	TCCGGA	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	145, 146
BspTNI	GGTCTC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	50, 57
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	111, 128, 233
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	104, 213
BstMAI	GTCTC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	63, 155
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	4 cut(s)	48, 56, 63, 68
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	104, 213
Cfr13I	GGNCC	5 cut(s)	47, 54, 61, 67, 144
CseI	GACGC	1 cut(s)	174
CviAII	CATG	2 cut(s)	51, 149
DdeI	CTNAG	3 cut(s)	111, 128, 233
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	63
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	2 cut(s)	54, 152
FaiI	YATR	4 cut(s)	52, 75, 150, 257
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	2 cut(s)	50, 148
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	2 cut(s)	111, 220
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	4 cut(s)	48, 56, 63, 68
HapII	CCGG	2 cut(s)	119, 156
HgaI	GACGC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	54, 152
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	2 cut(s)	119, 156
HphI	GGTGA	4 cut(s)	19, 26, 35, 95
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	96, 119
Hpy99I	CGWCG	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	3 cut(s)	111, 128, 233
Hsp92II	CATG	2 cut(s)	54, 152
KflI	GGGWCCC	1 cut(s)	144
Kpn2I	TCCGGA	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	50, 77, 81, 132, 169
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	7
MboII	GAAGA	3 cut(s)	183, 186, 253
MhlI	GDGCHC	2 cut(s)	45, 179
MnlI	CCTC	5 cut(s)	10, 52, 82, 100, 115
MroI	TCCGGA	1 cut(s)	118
MspI	CCGG	2 cut(s)	119, 156
MspR9I	CCNGG	2 cut(s)	65, 157
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	50
NlaIII	CATG	2 cut(s)	54, 152
NlaIV	GGNNCC	2 cut(s)	145, 146
NmeAIII	GCCGAG	2 cut(s)	24, 82
NmuCI	GTSAC	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	2 cut(s)	185, 194
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	145, 146
PspPI	GGNCC	5 cut(s)	47, 54, 61, 67, 144
PspPPI	RGGWCCY	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	179
SatI	GCNGC	1 cut(s)	214
Sau96I	GGNCC	5 cut(s)	47, 54, 61, 67, 144
ScrFI	CCNGG	2 cut(s)	65, 157
SduI	GDGCHC	2 cut(s)	45, 179
SetI	ASST	4 cut(s)	93, 129, 179, 218
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	144
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	63, 155
StyI	CCWWGG	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.