Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0021587

Physical Location & Seq

Genomic Coordinates Reverse (-)

25730275 .. 25731201

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028659

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCATTCAGTACATTTCTTCTGGGAAATGTAAACGAGGCTCCGGGCGAGTTCAGCCATACAAAGCAGTGGAGACTGGAGAAACACGCTAACAAGGAGGTGATCGGTAATACTGGTGGATATTTGTCCGAGTTCTATGAGGTAATGCCAGGGACGTACTTCCTCTCCGATGGACCCCAGCAGCAAAGAAATAGACAATACTATGCTCGTCGGATAGATATCTTGAATAGAAGAGAGAAGAAAGTGAGCAGGGTGCGCCTGACGGGACACTTGCAGAAGCGGAAGCTGATGAATAGTGTGACCGCATTGATAACTCCGCGGCTGGAGAGGCAGAGGCTGCAAGGTTCTCACTATGGCCGCTGTGCTTTTTCCTTCTCTTTCTCTAATCTCGCAGAGAAGAAAGCGACAGCAAACAAGGCCACTTTGACTCTGTTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

147

Amino Acids

16.89

Weight (kDa)

10.24

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021587)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000028659
rosa_roxburghii	Rroxscaffold_4G00306990
rosa_samantha	Rh1BG179100 Rh1DG208800
rosa_wichuraiana	Rw1G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	319
AciI	CCGC	5 cut(s)	280, 303, 317, 319, 358
AcoI	YGGCCR	1 cut(s)	355
AfaI	GTAC	3 cut(s)	13, 158, 437
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	337
AoxI	GGCC	2 cut(s)	355, 417
ApeKI	GCWGC	2 cut(s)	181, 337
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	193, 324
BccI	CCATC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	67
BisI	GCNGC	4 cut(s)	182, 320, 338, 358
BlsI	GCNGC	4 cut(s)	183, 321, 339, 359
Bme1390I	CCNGG	2 cut(s)	45, 150
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	42, 175
BmrFI	CCNGG	2 cut(s)	45, 150
BpmI	CTGGAG	2 cut(s)	98, 344
BpuMI	CCSGG	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	149, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse1I	ACTGG	2 cut(s)	81, 118
Bse8I	GATNNNNATC	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	149, 317
BseJI	GATNNNNATC	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	81, 118
BseXI	GCAGC	2 cut(s)	193, 324
BseYI	CCCAGC	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	357, 419
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	166, 279
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	166, 279
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	357, 419
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	5 cut(s)	280, 303, 317, 319, 358
BspANI	GGCC	2 cut(s)	357, 419
BspFNI	CGCG	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	42, 175
BsrI	ACTGG	2 cut(s)	81, 118
BssECI	CCNNGG	2 cut(s)	149, 317
BssMI	GATC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstDSI	CCRYGG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 255, 328, 337, 416
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	43, 148
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	193, 324
BsuRI	GGCC	2 cut(s)	357, 419
BtgI	CCRYGG	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
CaiI	CAGNNNCTG	1 cut(s)	337
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	173
Cfr42I	CCGCGG	1 cut(s)	320
Csp6I	GTAC	3 cut(s)	12, 157, 436
CviJI	RGCY	7 cut(s)	41, 57, 286, 322, 337, 357, 419
CviKI_1	RGCY	7 cut(s)	41, 57, 286, 322, 337, 357, 419
CviQI	GTAC	3 cut(s)	12, 157, 436
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	220
FaiI	YATR	4 cut(s)	60, 138, 204, 354
FaqI	GGGAC	2 cut(s)	166, 279
Fnu4HI	GCNGC	4 cut(s)	182, 320, 338, 358
Fsp4HI	GCNGC	4 cut(s)	182, 320, 338, 358
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	4 cut(s)	182, 320, 338, 358
GsaI	CCCAGC	1 cut(s)	181
GsuI	CTGGAG	2 cut(s)	98, 344
HaeIII	GGCC	2 cut(s)	357, 419
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	130, 169, 213
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	274, 340
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 255, 328, 337, 416
HpySE526I	ACGT	1 cut(s)	155
HspAI	GCGC	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	193, 324
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	4 cut(s)	11, 243, 250, 409
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	6 cut(s)	31, 91, 133, 173, 321, 327
MspA1I	CMGCKG	2 cut(s)	319, 360
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	45, 150
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	5 cut(s)	54, 255, 328, 337, 416
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	102
NlaIV	GGNNCC	2 cut(s)	42, 175
NmuCI	GTSAC	1 cut(s)	298
PctI	GAATGC	1 cut(s)	5
PkrI	GCNGC	4 cut(s)	183, 321, 339, 359
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	42, 175
PspPI	GGNCC	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	337
RsaI	GTAC	3 cut(s)	13, 158, 437
RsaNI	GTAC	3 cut(s)	12, 157, 436
SacII	CCGCGG	1 cut(s)	320
SatI	GCNGC	4 cut(s)	182, 320, 338, 358
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	45, 150
SetI	ASST	5 cut(s)	102, 144, 158, 288, 346
Sfr303I	CCGCGG	1 cut(s)	320
SgrBI	CCGCGG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	173
SsiI	CCGC	5 cut(s)	280, 303, 317, 319, 358
StyD4I	CCNGG	2 cut(s)	43, 148
TaiI	ACGT	1 cut(s)	158
TatI	WGTACW	2 cut(s)	11, 435
TauI	GCSGC	2 cut(s)	322, 360
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	181, 337
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.