Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0021586

Physical Location & Seq

Genomic Coordinates Reverse (-)

31613056 .. 31614275

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCGAACGAAGTCGGTCTCTGTCTCAGTGAAGATGAACTGGCAAGTTTCACTTCACGAAATAAAAACGAGGCATGGACACTCACAAGACTTTTACAGATCACCTCTATACAGCCCTTGCGACGCTGGACTCCGTACTTCGGGAGATGACCCTGAACTTGAGAAGGGAGAAAGTTTCAAGGAAAATCTAGAGAAAGCACTCCAACAATCACGATCGAAGAGGACCTCCTCCGGTCAACATGTTCTACCAGTCTTCTACAACGTCGATCCATCTCATGTGAGGAAGCAGGCAGAAAATCAGTCTTTGGAGAAGTTAAATGACTGGCGGGCAGCTAATAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

115

Amino Acids

13.07

Weight (kDa)

9.33

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021586)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029021 RLG00000029028
rosa_rugosa	Rorug01G0150400.1 Rorug01G0162400.1 Rorug01G0163500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	260
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	22, 28
AlwI	GGATC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	22, 28
BfaI	CTAG	2 cut(s)	188, 343
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	3 cut(s)	44, 248, 326
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	44, 248, 326
BseRI	GAGGAG	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	2 cut(s)	22, 28
Bso31I	GGTCTC	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	98, 212, 265
BspACI	CCGC	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	38
BspPI	GGATC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	44, 248, 326
BssMI	GATC	3 cut(s)	98, 212, 265
Bst6I	CTCTTC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	288, 327
BstDEI	CTNAG	1 cut(s)	25
BstKTI	GATC	3 cut(s)	101, 215, 268
BstMAI	GTCTC	2 cut(s)	22, 28
BstMBI	GATC	3 cut(s)	98, 212, 265
BstMCI	CGRYCG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	341
BstV2I	GAAGAC	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	288, 327
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	3 cut(s)	74, 239, 275
CviJI	RGCY	2 cut(s)	114, 332
CviKI_1	RGCY	2 cut(s)	114, 332
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	3 cut(s)	100, 214, 267
DpnII	GATC	3 cut(s)	98, 212, 265
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	222
FaeI	CATG	3 cut(s)	77, 242, 278
FaiI	YATR	4 cut(s)	75, 109, 240, 276
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FatI	CATG	3 cut(s)	73, 238, 274
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	188, 343
GluI	GCNGC	1 cut(s)	330
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	77, 242, 278
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188III	TCNNGA	4 cut(s)	56, 141, 188, 210
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	2 cut(s)	125, 266
HpyAV	CCTTC	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	261
HpyF3I	CTNAG	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	77, 242, 278
Kzo9I	GATC	3 cut(s)	98, 212, 265
LpnPI	CCDG	7 cut(s)	25, 111, 165, 244, 261, 272, 307
Lsp1109I	GCAGC	1 cut(s)	341
MaeI	CTAG	2 cut(s)	188, 343
MaeII	ACGT	1 cut(s)	261
MalI	GATC	3 cut(s)	100, 214, 267
MboI	GATC	3 cut(s)	98, 212, 265
MboII	GAAGA	3 cut(s)	43, 229, 244
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	6 cut(s)	63, 114, 213, 235, 238, 273
MseI	TTAA	1 cut(s)	314
MspI	CCGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	98, 212, 265
NlaIII	CATG	3 cut(s)	77, 242, 278
NspI	RCATGY	1 cut(s)	242
PciI	ACATGT	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	331
Ple19I	CGATCG	1 cut(s)	215
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	222
PscI	ACATGT	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	222
PspPPI	RGGWCCY	1 cut(s)	222
PvuI	CGATCG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	3 cut(s)	98, 212, 265
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	1 cut(s)	123
SetI	ASST	4 cut(s)	106, 227, 264, 334
SinI	GGWCC	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	2 cut(s)	188, 343
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	215, 264
TaqII	GACCGA	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	1 cut(s)	242
XspI	CTAG	2 cut(s)	188, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.