RLG00000029462

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0024728
Physical Location & Seq
Reverse (-)
39068933 .. 39070284
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029462

Sequence Viewer

Length: 651 bp
ATGGAGCCAGTAGTAGTGGCAACAGAGGAAGATGAAGCCAACATTCCAAAGAAACTTGATGCTGGAGCTCTATTTGTGCTCAAATCCAGAGGGTCATGGTTTCACTGTGGATATCACTTGACAACTTCAATTGTAGCTCCTGCACTCTTGAGTCTTCCCTATGCACTTTCCCTGATGGGTTGGTTTGCCGGCGTTATATGCCTGACTGTTTCAGCTCTGGTAACTTTCTATTCCTACAACCTTCTGTCCTTGGTTTTAGAGCACCATGCTCACCTTGGTCAGCGCCAGCTTCGCTTCCGCGACATGGCCAGGGATATTTTGGGACCAAGATGGGGAAGATATTTTGTAGGTCCAATTCAATTTGGCCTATGCTATGGTGCAGTTATAGCTTGCATTCTTTTAGGAGGACAGAGCCTTAAGTACATATTTCTGCTCTCTAGTTCAAGGCCGGAGACCATGAAACTCTACCAATTTGTTATTATATTTGGTGTCCTAATGCTAGTGTTGGCACAAATTCCATCATTCCACTCCTTAAGGCATCTCAACCTTGTTTCTCTGGTCCTTTCTCTTGCCTATAGCGCCTGTGCCACAGCCGGTTCCATATACATTGGAGTTGAGAGCTTGGAGTTGGAAAAGATGATGAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

217

Amino Acids

23.92

Weight (kDa)

8.6

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 30 - 202 2.3e-32 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024728)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0334361
rosa_laevigata RLG00000029462
rosa_samantha Rh1BG104800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 300
AciI CCGC 1 cut(s) 298
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 513
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 2 cut(s) 304, 332
AflII CTTAAG 2 cut(s) 416, 532
AgsI TTSAA 3 cut(s) 129, 359, 444
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 7 cut(s) 68, 137, 215, 289, 389, 621, 647
AluI AGCT 7 cut(s) 68, 137, 215, 289, 389, 621, 647
Alw21I GWGCWC 3 cut(s) 70, 81, 264
Alw26I GTCTC 1 cut(s) 446
AoxI GGCC 3 cut(s) 306, 364, 446
ApoI RAATTY 1 cut(s) 513
AspLEI GCGC 2 cut(s) 285, 581
AspS9I GGNCC 3 cut(s) 323, 350, 559
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 3 cut(s) 323, 350, 559
BalI TGGCCA 1 cut(s) 308
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 3 cut(s) 70, 81, 264
BccI CCATC 3 cut(s) 169, 324, 526
BciT130I CCWGG 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 2 cut(s) 438, 500
BfmI CTRYAG 1 cut(s) 574
BfoI RGCGCY 2 cut(s) 286, 582
BfrI CTTAAG 2 cut(s) 416, 532
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 3 cut(s) 323, 350, 559
BmgT120I GGNCC 3 cut(s) 323, 350, 559
BmiI GGNNCC 3 cut(s) 6, 324, 598
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 2 cut(s) 49, 547
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 249, 274, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 332
Bse118I RCCGGY 2 cut(s) 188, 593
Bse1I ACTGG 1 cut(s) 8
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 3 cut(s) 249, 274, 309
BseLI CCNNNNNNNGG 2 cut(s) 304, 332
BseNI ACTGG 1 cut(s) 8
BsgI GTGCAG 2 cut(s) 126, 399
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 3 cut(s) 308, 366, 448
BsiHKAI GWGCWC 3 cut(s) 70, 81, 264
BsiSI CCGG 3 cut(s) 189, 449, 594
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 304, 332
BsmAI GTCTC 1 cut(s) 446
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 3 cut(s) 308, 366, 448
Bso31I GGTCTC 1 cut(s) 446
Bsp1286I GDGCHC 3 cut(s) 70, 81, 264
BspACI CCGC 1 cut(s) 298
BspANI GGCC 3 cut(s) 308, 366, 448
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 6, 324, 598
BspTI CTTAAG 2 cut(s) 416, 532
BspTNI GGTCTC 1 cut(s) 446
BsrFI RCCGGY 2 cut(s) 188, 593
BsrI ACTGG 1 cut(s) 8
BssAI RCCGGY 2 cut(s) 188, 593
BssECI CCNNGG 3 cut(s) 249, 274, 309
BssT1I CCWWGG 2 cut(s) 249, 274
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 107, 208
BstAFI CTTAAG 2 cut(s) 416, 532
BstC8I GCNNGC 3 cut(s) 190, 287, 391
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 2 cut(s) 286, 582
BstHHI GCGC 2 cut(s) 285, 581
BstMAI GTCTC 1 cut(s) 446
BstMWI GCNNNNNNNGC 4 cut(s) 198, 291, 386, 578
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 574
BstUI CGCG 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 146
BsuRI GGCC 3 cut(s) 308, 366, 448
BtsIMutI CAGTG 1 cut(s) 103
Cac8I GCNNGC 3 cut(s) 190, 287, 391
CfoI GCGC 2 cut(s) 285, 581
Cfr10I RCCGGY 2 cut(s) 188, 593
Cfr13I GGNCC 3 cut(s) 323, 350, 559
Csp6I GTAC 1 cut(s) 421
CviAII CATG 4 cut(s) 96, 266, 304, 457
CviQI GTAC 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 249, 274
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 446
Eco32I GATATC 1 cut(s) 113
Eco47I GGWCC 3 cut(s) 323, 350, 559
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 308
EcoRV GATATC 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 249, 274
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 249, 274
FaeI CATG 4 cut(s) 99, 269, 307, 460
FaqI GGGAC 1 cut(s) 336
FatI CATG 4 cut(s) 95, 265, 303, 456
FriOI GRGCYC 1 cut(s) 70
FspBI CTAG 2 cut(s) 438, 500
GlaI GCGC 2 cut(s) 284, 580
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 2 cut(s) 286, 582
HaeIII GGCC 3 cut(s) 308, 366, 448
HapII CCGG 3 cut(s) 189, 449, 594
HhaI GCGC 2 cut(s) 285, 581
Hin1II CATG 4 cut(s) 99, 269, 307, 460
Hin6I GCGC 2 cut(s) 283, 579
HinP1I GCGC 2 cut(s) 283, 579
HinfI GANTC 1 cut(s) 151
HpaII CCGG 3 cut(s) 189, 449, 594
HphI GGTGA 1 cut(s) 263
Hpy188III TCNNGA 2 cut(s) 87, 148
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 2 cut(s) 107, 208
HpyCH4V TGCA 4 cut(s) 143, 164, 380, 393
HpyF10VI GCNNNNNNNGC 4 cut(s) 198, 291, 386, 578
Hsp92II CATG 4 cut(s) 99, 269, 307, 460
HspAI GCGC 2 cut(s) 283, 579
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
LmnI GCTCC 3 cut(s) 4, 65, 142
LweI GCATC 2 cut(s) 49, 547
MaeI CTAG 2 cut(s) 438, 500
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 3 cut(s) 41, 146, 348
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 3 cut(s) 70, 81, 264
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 5 cut(s) 129, 354, 359, 470, 513
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 3 cut(s) 19, 83, 398
Mox20I TGGCCA 1 cut(s) 308
MroNI GCCGGC 1 cut(s) 188
MscI TGGCCA 1 cut(s) 308
MseI TTAA 2 cut(s) 417, 533
Msp20I TGGCCA 1 cut(s) 308
MspCI CTTAAG 2 cut(s) 416, 532
MspI CCGG 3 cut(s) 189, 449, 594
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 4 cut(s) 198, 291, 386, 578
NaeI GCCGGC 1 cut(s) 190
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 4 cut(s) 99, 269, 307, 460
NlaIV GGNNCC 3 cut(s) 6, 324, 598
PctI GAATGC 1 cut(s) 393
PdiI GCCGGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 3 cut(s) 6, 324, 598
PspPI GGNCC 3 cut(s) 323, 350, 559
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 417, 533
Sau96I GGNCC 3 cut(s) 323, 350, 559
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 3 cut(s) 70, 81, 264
SfaNI GCATC 2 cut(s) 49, 547
SfcI CTRYAG 1 cut(s) 574
SinI GGWCC 3 cut(s) 323, 350, 559
SmlI CTYRAG 3 cut(s) 148, 416, 532
SmoI CTYRAG 3 cut(s) 148, 416, 532
Sse9I AATT 5 cut(s) 129, 354, 359, 470, 513
SsiI CCGC 1 cut(s) 298
SspMI CTAG 2 cut(s) 438, 500
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 2 cut(s) 249, 274
TaaI ACNGT 2 cut(s) 107, 208
TasI AATT 5 cut(s) 129, 354, 359, 470, 513
TatI WGTACW 1 cut(s) 420
Tru1I TTAA 2 cut(s) 417, 533
Tru9I TTAA 2 cut(s) 417, 533
TscAI CASTG 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 48, 473
TspRI CASTG 1 cut(s) 110
Vha464I CTTAAG 2 cut(s) 416, 532
VpaK11BI GGWCC 3 cut(s) 323, 350, 559
XapI RAATTY 1 cut(s) 513
XcmI CCANNNNNNNNNTGG 2 cut(s) 272, 316
XspI CTAG 2 cut(s) 438, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.