Rh1BG104800

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0024728
Physical Location & Seq
Forward (+)
18255288 .. 18257506
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG104800.1

Sequence Viewer

Length: 762 bp
ATGGAGCCAGTAGCAGTGGCAACAGAGGAACATGAAGCCAACATTCCAAAGAAACTTGATGCTGGAGCTCTATTTGTGCTCAAATCCAGAGGGTCATGGTTGCACTGTGGATATCACTTGACAACTTCAATTGTAGCTCCTGCACTCCTGAGTCTTCCCTATGCACTTTCCCTGCTGGGTTGGTTTGCCGGCGTTATATGCCTTACTGTTTCGGCTCTGGTAACTTTCTATTCGTACAACCTTCTATCCTTGGTTTTAGAACACCAAGCTCACCTTGGTCAGCGCCAGCTTCGCTTCCGTGACATGGCTAGAGATATTTTGGGACCAAGATGGGGAAGATATTTTGTAGGTCCAATTCAATTTGGCCTATGCTATGGTGCAGTTATAGCTTGCATTCTTTTAGGAGGACAGAGCCTTAAGTACATATTTCTGCTCTCTAGTTCAAGGCCAGAGACCATGAAACTCTACCAATTTGTTATTATATTTGGTGTCTTAATGCTGGTGTTGGCACAAATTCCATCCTTCCACTCCTTAAGGCATCTCAACCTTGTCTCTCTGGTCCTTTCTCTTGCCTATAGCGCCTGTGCCACAGCCGGTTCCATATACATTGGAAATTCCATGAATGCTCCTAGGAAGGACTATTCCTTAAATGGAAGCAAACAGAATCGCGTTTTTGGATCCTTCAATGCTATTTCAATCATTGCTACCACGTACGGAAATGGCATTATTCCGGAAATACAGGTTTTTGGAATTCCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

253

Amino Acids

27.78

Weight (kDa)

9.22

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 30 - 247 6.6e-37 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024728)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0334361
rosa_laevigata RLG00000029462
rosa_samantha Rh1BG104800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 669
AccIII TCCGGA 1 cut(s) 730
AclWI GGATC 2 cut(s) 672, 685
AcsI RAATTY 3 cut(s) 513, 613, 750
AfaI GTAC 3 cut(s) 236, 422, 713
AfiI CCNNNNNNNGG 2 cut(s) 304, 332
AflII CTTAAG 2 cut(s) 416, 532
AgsI TTSAA 5 cut(s) 129, 359, 444, 685, 696
AluBI AGCT 5 cut(s) 68, 137, 269, 289, 389
AluI AGCT 5 cut(s) 68, 137, 269, 289, 389
Alw21I GWGCWC 2 cut(s) 70, 81
Alw26I GTCTC 2 cut(s) 446, 556
AlwI GGATC 2 cut(s) 672, 685
Aor13HI TCCGGA 1 cut(s) 730
AoxI GGCC 2 cut(s) 364, 446
ApoI RAATTY 3 cut(s) 513, 613, 750
AspA2I CCTAGG 1 cut(s) 629
AspLEI GCGC 2 cut(s) 285, 581
AspS9I GGNCC 3 cut(s) 323, 350, 559
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 3 cut(s) 323, 350, 559
AvrII CCTAGG 1 cut(s) 629
BamHI GGATCC 1 cut(s) 677
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 70, 81
BccI CCATC 2 cut(s) 324, 526
BcoDI GTCTC 2 cut(s) 446, 556
BfaI CTAG 4 cut(s) 309, 438, 630, 760
BfmI CTRYAG 1 cut(s) 574
BfoI RGCGCY 2 cut(s) 286, 582
BfrI CTTAAG 2 cut(s) 416, 532
BlnI CCTAGG 1 cut(s) 629
Bme18I GGWCC 3 cut(s) 323, 350, 559
BmgT120I GGNCC 3 cut(s) 323, 350, 559
BmiI GGNNCC 4 cut(s) 6, 324, 598, 679
BmsI GCATC 2 cut(s) 49, 547
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 249, 274, 629
BsaWI WCCGGW 1 cut(s) 730
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 332
Bse118I RCCGGY 2 cut(s) 188, 593
Bse1I ACTGG 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 699
BseAI TCCGGA 1 cut(s) 730
BseDI CCNNGG 3 cut(s) 249, 274, 629
BseGI GGATG 1 cut(s) 518
BseLI CCNNNNNNNGG 2 cut(s) 304, 332
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 175
BsgI GTGCAG 2 cut(s) 126, 399
Bsh1236I CGCG 1 cut(s) 669
BshFI GGCC 2 cut(s) 366, 448
BsiHKAI GWGCWC 2 cut(s) 70, 81
BsiSI CCGG 3 cut(s) 189, 594, 731
BsiWI CGTACG 1 cut(s) 711
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 304, 332
BsmAI GTCTC 2 cut(s) 446, 556
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 2 cut(s) 393, 628
BsnI GGCC 2 cut(s) 366, 448
Bso31I GGTCTC 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 70, 81
Bsp13I TCCGGA 1 cut(s) 730
Bsp143I GATC 1 cut(s) 677
BspANI GGCC 2 cut(s) 366, 448
BspCNI CTCAG 1 cut(s) 141
BspEI TCCGGA 1 cut(s) 730
BspFNI CGCG 1 cut(s) 669
BspLI GGNNCC 4 cut(s) 6, 324, 598, 679
BspPI GGATC 2 cut(s) 672, 685
BspTI CTTAAG 2 cut(s) 416, 532
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 2 cut(s) 188, 593
BsrI ACTGG 1 cut(s) 8
BssAI RCCGGY 2 cut(s) 188, 593
BssECI CCNNGG 3 cut(s) 249, 274, 629
BssMI GATC 1 cut(s) 677
BssT1I CCWWGG 3 cut(s) 249, 274, 629
Bst4CI ACNGT 2 cut(s) 107, 208
BstAFI CTTAAG 2 cut(s) 416, 532
BstBAI YACGTR 1 cut(s) 711
BstC8I GCNNGC 3 cut(s) 190, 287, 391
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 518
BstFNI CGCG 1 cut(s) 669
BstH2I RGCGCY 2 cut(s) 286, 582
BstHHI GCGC 2 cut(s) 285, 581
BstKTI GATC 1 cut(s) 680
BstMAI GTCTC 2 cut(s) 446, 556
BstMBI GATC 1 cut(s) 677
BstMWI GCNNNNNNNGC 4 cut(s) 198, 291, 386, 578
BstSFI CTRYAG 1 cut(s) 574
BstUI CGCG 1 cut(s) 669
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 677
BstYI RGATCY 1 cut(s) 677
BsuRI GGCC 2 cut(s) 366, 448
BtsCI GGATG 1 cut(s) 518
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 21, 103
Cac8I GCNNGC 3 cut(s) 190, 287, 391
CfoI GCGC 2 cut(s) 285, 581
Cfr10I RCCGGY 2 cut(s) 188, 593
Cfr13I GGNCC 3 cut(s) 323, 350, 559
Csp6I GTAC 3 cut(s) 235, 421, 712
CviAII CATG 5 cut(s) 32, 96, 304, 457, 619
CviQI GTAC 3 cut(s) 235, 421, 712
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 679
DpnII GATC 1 cut(s) 677
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 3 cut(s) 249, 274, 629
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 446
Eco32I GATATC 1 cut(s) 113
Eco47I GGWCC 3 cut(s) 323, 350, 559
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 750
EcoRV GATATC 1 cut(s) 113
EcoT14I CCWWGG 3 cut(s) 249, 274, 629
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 3 cut(s) 249, 274, 629
FaeI CATG 5 cut(s) 35, 99, 307, 460, 622
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 336
FatI CATG 5 cut(s) 31, 95, 303, 456, 618
FokI GGATG 1 cut(s) 505
FriOI GRGCYC 1 cut(s) 70
FspBI CTAG 4 cut(s) 309, 438, 630, 760
GlaI GCGC 2 cut(s) 284, 580
GsaI CCCAGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 2 cut(s) 286, 582
HaeIII GGCC 2 cut(s) 366, 448
HapII CCGG 3 cut(s) 189, 594, 731
HhaI GCGC 2 cut(s) 285, 581
Hin1II CATG 5 cut(s) 35, 99, 307, 460, 622
Hin6I GCGC 2 cut(s) 283, 579
HinP1I GCGC 2 cut(s) 283, 579
HinfI GANTC 2 cut(s) 151, 664
HpaII CCGG 3 cut(s) 189, 594, 731
HphI GGTGA 1 cut(s) 263
Hpy188III TCNNGA 3 cut(s) 87, 148, 731
HpyAV CCTTC 4 cut(s) 251, 532, 628, 691
HpyCH4III ACNGT 2 cut(s) 107, 208
HpyCH4IV ACGT 1 cut(s) 710
HpyCH4V TGCA 5 cut(s) 103, 143, 164, 380, 393
HpyF10VI GCNNNNNNNGC 4 cut(s) 198, 291, 386, 578
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 710
Hsp92II CATG 5 cut(s) 35, 99, 307, 460, 622
HspAI GCGC 2 cut(s) 283, 579
Kpn2I TCCGGA 1 cut(s) 730
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 677
LmnI GCTCC 4 cut(s) 4, 65, 142, 631
LweI GCATC 2 cut(s) 49, 547
MaeI CTAG 4 cut(s) 309, 438, 630, 760
MaeII ACGT 1 cut(s) 710
MaeIII GTNAC 2 cut(s) 220, 299
MalI GATC 1 cut(s) 679
MboI GATC 1 cut(s) 677
MboII GAAGA 2 cut(s) 146, 348
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 1 cut(s) 677
MhlI GDGCHC 2 cut(s) 70, 81
MluCI AATT 7 cut(s) 129, 354, 359, 470, 513, 613, 750
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 3 cut(s) 19, 83, 398
MroI TCCGGA 1 cut(s) 730
MroNI GCCGGC 1 cut(s) 188
MseI TTAA 4 cut(s) 417, 494, 533, 647
MspCI CTTAAG 2 cut(s) 416, 532
MspI CCGG 3 cut(s) 189, 594, 731
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 2 cut(s) 393, 628
MvnI CGCG 1 cut(s) 669
MwoI GCNNNNNNNGC 4 cut(s) 198, 291, 386, 578
NaeI GCCGGC 1 cut(s) 190
NdeII GATC 1 cut(s) 677
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 5 cut(s) 35, 99, 307, 460, 622
NlaIV GGNNCC 4 cut(s) 6, 324, 598, 679
NmuCI GTSAC 1 cut(s) 299
PctI GAATGC 2 cut(s) 393, 628
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 664
Pfl23II CGTACG 1 cut(s) 711
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Ppu21I YACGTR 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 175
PspLI CGTACG 1 cut(s) 711
PspN4I GGNNCC 4 cut(s) 6, 324, 598, 679
PspPI GGNCC 3 cut(s) 323, 350, 559
PsuI RGATCY 1 cut(s) 677
RsaI GTAC 3 cut(s) 236, 422, 713
RsaNI GTAC 3 cut(s) 235, 421, 712
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 4 cut(s) 417, 494, 533, 647
Sau3AI GATC 1 cut(s) 677
Sau96I GGNCC 3 cut(s) 323, 350, 559
SchI GAGTC 1 cut(s) 160
SduI GDGCHC 2 cut(s) 70, 81
SfaNI GCATC 2 cut(s) 49, 547
SfcI CTRYAG 1 cut(s) 574
SinI GGWCC 3 cut(s) 323, 350, 559
SmlI CTYRAG 2 cut(s) 416, 532
SmoI CTYRAG 2 cut(s) 416, 532
Sse9I AATT 7 cut(s) 129, 354, 359, 470, 513, 613, 750
SspMI CTAG 4 cut(s) 309, 438, 630, 760
SstI GAGCTC 1 cut(s) 70
StyI CCWWGG 3 cut(s) 249, 274, 629
TaaI ACNGT 2 cut(s) 107, 208
TaiI ACGT 1 cut(s) 713
TasI AATT 7 cut(s) 129, 354, 359, 470, 513, 613, 750
TatI WGTACW 1 cut(s) 420
TfiI GAWTC 1 cut(s) 664
Tru1I TTAA 4 cut(s) 417, 494, 533, 647
Tru9I TTAA 4 cut(s) 417, 494, 533, 647
TscAI CASTG 2 cut(s) 21, 110
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 3 cut(s) 48, 473, 635
TspGWI ACGGA 2 cut(s) 287, 729
TspRI CASTG 2 cut(s) 21, 110
Vha464I CTTAAG 2 cut(s) 416, 532
VpaK11BI GGWCC 3 cut(s) 323, 350, 559
XapI RAATTY 3 cut(s) 513, 613, 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XmaJI CCTAGG 1 cut(s) 629
XspI CTAG 4 cut(s) 309, 438, 630, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.