Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0025389

Physical Location & Seq

Genomic Coordinates Reverse (-)

61047542 .. 61049585

Gene Structure 2044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030405

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTGCCCTTCTGATATTGAATGGGATAGAGCCACCGTCATTACTAGCTACTTGAAGCACTTTGTTGAGGTTACTAATGTTTTTAAAAGATTCACGTCTCCAATTGCAAATCTATATTTTCAGGCAGAAAAAGTGACCGTGGTGTTTCCTATGAGATTCAAGGACTCTATTGACATTGTTCTTGCAACTTCCTTCCTGCAGGGAGTTGAGGCATTTCAGCAAGCTTTGGAGTTCTCTCCCAAAAGTGTCTCTGCACACTATGGACTTTCTTCGGGGCTGCTTGGTTTGGCTAAGGAATGTATTAATCTGGGAGCATTTAGATGGGGGCTACAGTTTTATAGCTGGAAATATGTCTTTGATCTGGGAGCATTTAGATGGGAAGCTACAGTTTTAGAGGACTTTCCAACAAATTCATCAGTTGAGAAAAGTGAAGCATCAGTTGTTGCTGACTTCGCCAGTAGAATCCCTTCATCCTCTTCTGTTTCCCATGTTATCAGTGTTGGACAGCTTCTAGAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0019439 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035327 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070478 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

174

Amino Acids

19.31

Weight (kDa)

5.35

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025389)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030405
rosa_multiflora	Rmu_ssc0000400.1_g000037
rosa_wichuraiana	Rw0G005690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	409
AgsI	TTSAA	3 cut(s)	20, 55, 160
AjiI	CACGTC	1 cut(s)	96
AluBI	AGCT	5 cut(s)	48, 224, 342, 383, 508
AluI	AGCT	5 cut(s)	48, 224, 342, 383, 508
Alw26I	GTCTC	2 cut(s)	102, 253
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	409
AseI	ATTAAT	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	451, 483
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	2 cut(s)	315, 369
BcoDI	GTCTC	2 cut(s)	102, 253
BfaI	CTAG	2 cut(s)	45, 512
BfmI	CTRYAG	3 cut(s)	197, 329, 384
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
BmgBI	CACGTC	1 cut(s)	96
BmsI	GCATC	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	470
BseNI	ACTGG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	102, 253
BsmBI	CGTCTC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	358
BspMAI	CTGCAG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	358
Bst4CI	ACNGT	4 cut(s)	37, 139, 333, 388
Bst6I	CTCTTC	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	470
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	2 cut(s)	102, 253
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstSFI	CTRYAG	3 cut(s)	197, 329, 384
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	222
CviAII	CATG	1 cut(s)	488
CviJI	RGCY	9 cut(s)	32, 48, 224, 277, 290, 328, 342, 383, 508
CviKI_1	RGCY	9 cut(s)	32, 48, 224, 277, 290, 328, 342, 383, 508
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
DraI	TTTAAA	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	481
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	1 cut(s)	491
FaiI	YATR	6 cut(s)	115, 152, 261, 339, 351, 489
FatI	CATG	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	2 cut(s)	45, 512
GluI	GCNGC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	491
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	5 cut(s)	90, 156, 164, 462, 515
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	512, 519
HpyAV	CCTTC	3 cut(s)	18, 202, 477
HpyCH4III	ACNGT	4 cut(s)	37, 139, 333, 388
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	107, 185, 199, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	491
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	2 cut(s)	311, 365
LpnPI	CCDG	7 cut(s)	107, 185, 209, 293, 328, 347, 469
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	2 cut(s)	45, 512
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	70, 133
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	261, 468
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	102, 409
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	428, 481
MnlI	CCTC	4 cut(s)	61, 202, 388, 484
MroXI	GAANNNNTTC	1 cut(s)	466
MseI	TTAA	2 cut(s)	84, 303
MslI	CAYNNNNRTG	2 cut(s)	319, 373
MunI	CAATTG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	4 cut(s)	90, 156, 462, 515
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PshBI	ATTAAT	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	201
RseI	CAYNNNNRTG	2 cut(s)	319, 373
SaqAI	TTAA	2 cut(s)	84, 303
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	1 cut(s)	358
SbfI	CCTGCAGG	1 cut(s)	201
SchI	GAGTC	1 cut(s)	158
SdaI	CCTGCAGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	50, 72, 98, 226, 344, 385, 510
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	3 cut(s)	197, 329, 384
SmiMI	CAYNNNNRTG	2 cut(s)	319, 373
Sse8387I	CCTGCAGG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	102, 409
SspMI	CTAG	2 cut(s)	45, 512
TaaI	ACNGT	4 cut(s)	37, 139, 333, 388
TaiI	ACGT	1 cut(s)	98
TasI	AATT	2 cut(s)	102, 409
TfiI	GAWTC	4 cut(s)	90, 156, 462, 515
Tru1I	TTAA	2 cut(s)	84, 303
Tru9I	TTAA	2 cut(s)	84, 303
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	402, 459
TspRI	CASTG	1 cut(s)	502
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	1 cut(s)	409
XbaI	TCTAGA	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	466
XspI	CTAG	2 cut(s)	45, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.