Rw0G005690

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00224
OG0025389
Physical Location & Seq
Reverse (-)
128144 .. 131313
3170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005690.1

Sequence Viewer

Length: 1155 bp
ATGACGTCCGTACCACATTCAGGTGACGAGATGAAAAACCCACACATTGTGCTGCTTTCGGTTTCGCTGCCGGAAACTGTGTTCTTGAGTGGGCTTCCTGCTGGGGCTATAGAGGCCATAAAGGCTGCGTATGGATCAGTAGTGCAGATTCTTGACCCACCTAGAGATGGGTTTAATCTTACATTGAAGCTCAGTCTCTCTAAACTTCCTACAGATGAAGATTGCATCTTTAAGGGACGTGGTGCTAGGTGCTTCATTGAGAGTAATTCTGAAGCAGCTTCTTTGAGGACTGTTGCTTCCGATATTGATCCACTTGTTGCTCTTGTGCATCGGCCAAAGGAATCATTTTTCCTTATTCCTCAGGCAGAAAAGGTGACCGTGGTATTTCCTATGAGATTCAAGGACTCTATTGACATTGTTCTTGCAACTTCCTTCCTGCAGGGAGTTGAGGCATTTCAGCAAGCTTTGGAGTTCTCTCCCGAAAGTGTCTCTGCACACTATGGACTTTCTTCGGGGCTGCTCGGTTTGGCTAAGGAATGTATTAATCTTGGAGCATTTAGATGGGGGCTACAGTTTTATAGGAGGCATCTAAAGTTGCCTGGACGAGACTTTCCAACAAATTCATCGGTTGAGGATGATGCAAGAAGTGAAGCATCAGTTGTTGCTAACTTCTCCCGGTTCATTCCTAGAATCCCTTCAACCTCTTCTGTTTCCCATGTTATCAGTGTTGGACAGCTTCTAGAATCGGCACTTGAGGTTGCTGGTCACGTAGCAGGAACATCTGTATCTACATCACACCTCCCATGCAACACCATGGCAAGACAGTGTGAATCCCTTGGCACAGGCACAAGGAAGAAGCTTTCTAATTGGTTGGCCCATGAACAACATCAAAGCAACACTGTCCCACCATTTCTTGCAGGTGGATGCACAGCACTTCAGAAGGGAGCTGCATCGGCACAGGACTCGTGGTTAGCTGCTATCAGTTTGCCTCCTGCTAGTCCGTTTGACAACATCCTCAAAGGCAGCTGGCCGGTTGTTAGTAGAAGATCTAGTATTAAGCATGATGAAATCTGCATCTTTTTATCTCTCCTCTCTTACCTTTCACCCGCCTTCCCTCTCCCTGCCAACTCTAAAAAGGTTGTGCCTCCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

41.36

Weight (kDa)

7.16

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
P34-Arc PF04045 35 - 157 3.2e-09 Arp2/3 complex, 34 kD subunit p34-Arc
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025389)

Species Orthologous Gene IDs
rosa_laevigata RLG00000030405
rosa_multiflora Rmu_ssc0000400.1_g000037
rosa_wichuraiana Rw0G005690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 908
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 908
AciI CCGC 1 cut(s) 1107
AclWI GGATC 2 cut(s) 142, 302
AcoI YGGCCR 2 cut(s) 332, 1028
AcsI RAATTY 1 cut(s) 619
AcuI CTGAAG 2 cut(s) 291, 920
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 20, 167
AgsI TTSAA 3 cut(s) 187, 400, 699
AjiI CACGTC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 598
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 8 cut(s) 190, 278, 464, 736, 859, 947, 974, 1026
AluI AGCT 8 cut(s) 190, 278, 464, 736, 859, 947, 974, 1026
Alw26I GTCTC 3 cut(s) 200, 493, 600
AlwI GGATC 2 cut(s) 142, 302
AoxI GGCC 4 cut(s) 114, 332, 873, 1028
ApeKI GCWGC 8 cut(s) 52, 67, 125, 275, 517, 947, 974, 1023
ApoI RAATTY 1 cut(s) 619
AseI ATTAAT 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 694
AspS9I GGNCC 1 cut(s) 874
AsuC2I CCSGG 1 cut(s) 676
AsuHPI GGTGA 3 cut(s) 35, 385, 1095
AxyI CCTNAGG 1 cut(s) 360
BaeI ACNNNNGTAYC 3 cut(s) 27, 768, 801
BauI CACGAG 1 cut(s) 964
BbvI GCAGC 8 cut(s) 39, 54, 112, 287, 504, 934, 961, 1035
BccI CCATC 2 cut(s) 161, 555
BcgI CGANNNNNNTGC 2 cut(s) 945, 979
BciT130I CCWGG 1 cut(s) 600
BcnI CCSGG 1 cut(s) 676
BcoDI GTCTC 3 cut(s) 200, 493, 600
BfaI CTAG 6 cut(s) 162, 246, 687, 740, 996, 1050
BfmI CTRYAG 4 cut(s) 108, 210, 437, 569
BfuAI ACCTGC 1 cut(s) 908
BglI GCCNNNNNGGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 1046
BisI GCNGC 8 cut(s) 53, 68, 126, 276, 518, 948, 975, 1024
BlsI GCNGC 8 cut(s) 54, 69, 127, 277, 519, 949, 976, 1025
Bme1390I CCNGG 2 cut(s) 600, 676
BmgBI CACGTC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 874
BmrFI CCNGG 2 cut(s) 600, 676
BmsI GCATC 8 cut(s) 234, 337, 595, 628, 662, 914, 959, 1083
Bpu10I CCTNAGC 1 cut(s) 531
BpuEI CTTGAG 2 cut(s) 106, 773
BpuMI CCSGG 1 cut(s) 676
BsaAI YACGTR 1 cut(s) 769
BsaBI GATNNNNATC 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 378, 813, 835
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 167
Bse118I RCCGGY 1 cut(s) 1030
Bse21I CCTNAGG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 3 cut(s) 378, 813, 835
BseGI GGATG 3 cut(s) 640, 929, 1011
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 20, 167
BseMII CTCAG 2 cut(s) 205, 374
BseRI GAGGAG 1 cut(s) 1079
BseXI GCAGC 8 cut(s) 39, 54, 112, 287, 504, 934, 961, 1035
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 2 cut(s) 164, 477
BshFI GGCC 4 cut(s) 116, 334, 875, 1030
BsiSI CCGG 3 cut(s) 71, 676, 1031
BslFI GGGAC 2 cut(s) 249, 887
BslI CCNNNNNNNGG 2 cut(s) 20, 167
BsmAI GTCTC 3 cut(s) 200, 493, 600
BsmFI GGGAC 2 cut(s) 249, 887
BsnI GGCC 4 cut(s) 116, 334, 875, 1030
Bsp143I GATC 3 cut(s) 134, 307, 1046
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 1 cut(s) 1107
BspANI GGCC 4 cut(s) 116, 334, 875, 1030
BspCNI CTCAG 2 cut(s) 204, 373
BspMAI CTGCAG 1 cut(s) 441
BspMI ACCTGC 1 cut(s) 908
BspPI GGATC 2 cut(s) 142, 302
BsrFI RCCGGY 1 cut(s) 1030
BssAI RCCGGY 1 cut(s) 1030
BssECI CCNNGG 3 cut(s) 378, 813, 835
BssMI GATC 3 cut(s) 134, 307, 1046
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 964
BssT1I CCWWGG 2 cut(s) 813, 835
Bst2BI CACGAG 1 cut(s) 964
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 6 cut(s) 79, 292, 379, 573, 825, 901
Bst6I CTCTTC 1 cut(s) 709
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 769
BstC8I GCNNGC 2 cut(s) 462, 1028
BstDEI CTNAG 3 cut(s) 191, 360, 531
BstDSI CCRYGG 2 cut(s) 378, 813
BstEII GGTNACC 1 cut(s) 373
BstF5I GGATG 3 cut(s) 640, 929, 1011
BstKTI GATC 3 cut(s) 137, 310, 1049
BstMAI GTCTC 3 cut(s) 200, 493, 600
BstMBI GATC 3 cut(s) 134, 307, 1046
BstMWI GCNNNNNNNGC 3 cut(s) 113, 122, 953
BstNI CCWGG 1 cut(s) 600
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 598, 674
BstSFI CTRYAG 4 cut(s) 108, 210, 437, 569
BstV1I GCAGC 8 cut(s) 39, 54, 112, 287, 504, 934, 961, 1035
BstX2I RGATCY 1 cut(s) 1046
BstYI RGATCY 1 cut(s) 1046
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 4 cut(s) 116, 334, 875, 1030
BtgI CCRYGG 2 cut(s) 378, 813
BtrI CACGTC 1 cut(s) 239
BtsCI GGATG 3 cut(s) 640, 929, 1011
BtsIMutI CAGTG 3 cut(s) 730, 830, 897
BveI ACCTGC 1 cut(s) 908
Cac8I GCNNGC 2 cut(s) 462, 1028
Cfr10I RCCGGY 1 cut(s) 1030
Cfr13I GGNCC 1 cut(s) 874
Csp6I GTAC 1 cut(s) 11
CviAII CATG 5 cut(s) 716, 804, 814, 878, 1061
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 3 cut(s) 191, 360, 531
DpnI GATC 3 cut(s) 136, 309, 1048
DpnII GATC 3 cut(s) 134, 307, 1046
DraIII CACNNNGTG 1 cut(s) 49
EaeI YGGCCR 2 cut(s) 332, 1028
Eam1104I CTCTTC 1 cut(s) 709
EarI CTCTTC 1 cut(s) 709
Eco130I CCWWGG 2 cut(s) 813, 835
Eco57I CTGAAG 2 cut(s) 291, 920
Eco81I CCTNAGG 1 cut(s) 360
Eco91I GGTNACC 1 cut(s) 373
EcoO65I GGTNACC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 2 cut(s) 813, 835
ErhI CCWWGG 2 cut(s) 813, 835
FaeI CATG 5 cut(s) 719, 807, 817, 881, 1064
FaqI GGGAC 2 cut(s) 249, 887
FatI CATG 5 cut(s) 715, 803, 813, 877, 1060
FauI CCCGC 1 cut(s) 1114
Fnu4HI GCNGC 8 cut(s) 53, 68, 126, 276, 518, 948, 975, 1024
FokI GGATG 3 cut(s) 647, 936, 998
Fsp4HI GCNGC 8 cut(s) 53, 68, 126, 276, 518, 948, 975, 1024
FspBI CTAG 6 cut(s) 162, 246, 687, 740, 996, 1050
GluI GCNGC 8 cut(s) 53, 68, 126, 276, 518, 948, 975, 1024
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 4 cut(s) 116, 334, 875, 1030
HapII CCGG 3 cut(s) 71, 676, 1031
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 719, 807, 817, 881, 1064
HindIII AAGCTT 2 cut(s) 462, 857
HinfI GANTC 8 cut(s) 148, 341, 396, 404, 690, 743, 830, 962
HpaII CCGG 3 cut(s) 71, 676, 1031
HphI GGTGA 3 cut(s) 35, 385, 1095
Hpy188I TCNGA 3 cut(s) 271, 301, 939
Hpy188III TCNNGA 4 cut(s) 85, 152, 479, 740
HpyAV CCTTC 4 cut(s) 442, 705, 934, 1120
HpyCH4III ACNGT 6 cut(s) 79, 292, 379, 573, 825, 901
HpyCH4IV ACGT 3 cut(s) 5, 238, 768
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 122, 953
HpyF3I CTNAG 3 cut(s) 191, 360, 531
HpySE526I ACGT 3 cut(s) 5, 238, 768
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 719, 807, 817, 881, 1064
Kzo9I GATC 3 cut(s) 134, 307, 1046
LmnI GCTCC 2 cut(s) 551, 944
Lsp1109I GCAGC 8 cut(s) 39, 54, 112, 287, 504, 934, 961, 1035
LweI GCATC 8 cut(s) 234, 337, 595, 628, 662, 914, 959, 1083
MaeI CTAG 6 cut(s) 162, 246, 687, 740, 996, 1050
MaeII ACGT 3 cut(s) 5, 238, 768
MaeIII GTNAC 3 cut(s) 23, 373, 764
MalI GATC 3 cut(s) 136, 309, 1048
MboI GATC 3 cut(s) 134, 307, 1046
MboII GAAGA 5 cut(s) 230, 501, 696, 865, 1056
MflI RGATCY 1 cut(s) 1046
MluCI AATT 3 cut(s) 265, 619, 865
MlyI GAGTC 2 cut(s) 398, 956
MmeI TCCRAC 2 cut(s) 638, 709
MroXI GAANNNNTTC 1 cut(s) 694
MseI TTAA 5 cut(s) 174, 231, 543, 1056, 1153
MslI CAYNNNNRTG 2 cut(s) 21, 559
MspA1I CMGCKG 1 cut(s) 1026
MspI CCGG 3 cut(s) 71, 676, 1031
MspR9I CCNGG 2 cut(s) 600, 676
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 3 cut(s) 113, 122, 953
NciI CCSGG 1 cut(s) 676
NcoI CCATGG 1 cut(s) 813
NdeII GATC 3 cut(s) 134, 307, 1046
NlaIII CATG 5 cut(s) 719, 807, 817, 881, 1064
NmuCI GTSAC 3 cut(s) 23, 373, 764
PaqCI CACCTGC 1 cut(s) 908
PdmI GAANNNNTTC 1 cut(s) 694
PfeI GAWTC 6 cut(s) 148, 341, 396, 690, 743, 830
PkrI GCNGC 8 cut(s) 54, 69, 127, 277, 519, 949, 976, 1025
PleI GAGTC 2 cut(s) 398, 956
PpsI GAGTC 2 cut(s) 398, 956
Ppu21I YACGTR 1 cut(s) 769
PshBI ATTAAT 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 598
PspEI GGTNACC 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 598
PspPI GGNCC 1 cut(s) 874
PstI CTGCAG 1 cut(s) 441
PsuI RGATCY 1 cut(s) 1046
PvuII CAGCTG 1 cut(s) 1026
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 2 cut(s) 21, 559
SaqAI TTAA 5 cut(s) 174, 231, 543, 1056, 1153
SatI GCNGC 8 cut(s) 53, 68, 126, 276, 518, 948, 975, 1024
Sau3AI GATC 3 cut(s) 134, 307, 1046
Sau96I GGNCC 1 cut(s) 874
SbfI CCTGCAGG 1 cut(s) 441
SchI GAGTC 2 cut(s) 398, 956
ScrFI CCNGG 2 cut(s) 600, 676
SdaI CCTGCAGG 1 cut(s) 441
SfaNI GCATC 8 cut(s) 234, 337, 595, 628, 662, 914, 959, 1083
SfcI CTRYAG 4 cut(s) 108, 210, 437, 569
SmiMI CAYNNNNRTG 2 cut(s) 21, 559
SmlI CTYRAG 2 cut(s) 85, 752
SmoI CTYRAG 2 cut(s) 85, 752
Sse8387I CCTGCAGG 1 cut(s) 441
Sse9I AATT 3 cut(s) 265, 619, 865
SsiI CCGC 1 cut(s) 1107
SspMI CTAG 6 cut(s) 162, 246, 687, 740, 996, 1050
StyD4I CCNGG 2 cut(s) 598, 674
StyI CCWWGG 2 cut(s) 813, 835
TaaI ACNGT 6 cut(s) 79, 292, 379, 573, 825, 901
TaiI ACGT 3 cut(s) 8, 241, 771
TasI AATT 3 cut(s) 265, 619, 865
TfiI GAWTC 6 cut(s) 148, 341, 396, 690, 743, 830
Tru1I TTAA 5 cut(s) 174, 231, 543, 1056, 1153
Tru9I TTAA 5 cut(s) 174, 231, 543, 1056, 1153
TscAI CASTG 3 cut(s) 730, 830, 904
TseFI GTSAC 3 cut(s) 23, 373, 764
TseI GCWGC 8 cut(s) 52, 67, 125, 275, 517, 947, 974, 1023
Tsp45I GTSAC 3 cut(s) 23, 373, 764
TspDTI ATGAA 7 cut(s) 47, 231, 244, 612, 670, 894, 1080
TspGWI ACGGA 1 cut(s) 990
TspRI CASTG 3 cut(s) 730, 830, 904
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 1 cut(s) 619
XbaI TCTAGA 1 cut(s) 739
XmnI GAANNNNTTC 1 cut(s) 694
XspI CTAG 6 cut(s) 162, 246, 687, 740, 996, 1050
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.