RLG00000030741

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0024757
Physical Location & Seq
Reverse (-)
66787854 .. 66795258
7405 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030741

Sequence Viewer

Length: 729 bp
ATGAAATTATCTATGATTCATACATTACAAAATAGATTTTCCTCTGGAACGATAACTATAGATTTTCCTTGCCTGAAAAAGCTTTCCATTTATGCATGCCCTAAACTGGAGGGTGTGGTAGAGCTTGTGGTTCGTGAATGTGACCAACTGGTGGTTTCAATTGCCCACTATAAAGAACTTTCCGTATTATGCATCCGCTATTGCAAAGGGGTTGTATACAGTAGTGTGGTTGACTTTCAGTTATTAGATTTGGAGATAACTGGCGGTCAGGAGCTGACATGTTCATTGCCGAATGAGGATGGATTTCTGCAAAACCTTATGTCACTTCGTCATCTGAGCATTGAAGGTAATTCCAATTCTAGAGAAATCAAGATTATTCGACACAAGAAAACATGTTTTCAGAGCTTGGTGCACTTCATTGCCATTGTAGCTGCAGAAATCAATATTAATCAGGGTCAGGATTCAGGAGACTCAGCAATCGATCAGGATTCAGACTCCCAAAAGACAAAAAACAGAAGATATGTAGGGCAAACCCTTGAAGGAGTAAAGCAGCATTCTTCTGCGGTTTCACAAATCCAGGGGGAGGAGAGACCGATGACACAACTTGATCTCAAATATGCTCTGCAATGTTCTCAAATATATTCAATCCACTTCTCAACTGTGTTTTGTGCATTCCTTTTGGACTACGTTTTGCGGTCCAAATATGTGAGGCTTTTCCTAGTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

243

Amino Acids

27.36

Weight (kDa)

7.56

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024757)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0315511
rosa_laevigata RLG00000030741
rosa_samantha Rh1BG007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 216
AciI CCGC 4 cut(s) 196, 264, 563, 694
AfiI CCNNNNNNNGG 3 cut(s) 106, 151, 583
AflIII ACRYGT 2 cut(s) 278, 392
AgsI TTSAA 4 cut(s) 159, 344, 539, 645
AjnI CCWGG 1 cut(s) 576
AluBI AGCT 5 cut(s) 82, 124, 274, 405, 431
AluI AGCT 5 cut(s) 82, 124, 274, 405, 431
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 2 cut(s) 462, 583
Alw44I GTGCAC 1 cut(s) 410
AlwNI CAGNNNCTG 1 cut(s) 274
ApaLI GTGCAC 1 cut(s) 410
ApeKI GCWGC 2 cut(s) 431, 550
AseI ATTAAT 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 696
AvaII GGWCC 1 cut(s) 696
BaeGI GKGCMC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 418, 562
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 578
BcoDI GTCTC 2 cut(s) 462, 583
BfaI CTAG 2 cut(s) 360, 719
BfmI CTRYAG 2 cut(s) 57, 432
BisI GCNGC 2 cut(s) 432, 551
BlsI GCNGC 2 cut(s) 433, 552
Bme1390I CCNGG 1 cut(s) 578
Bme18I GGWCC 1 cut(s) 696
BmgT120I GGNCC 1 cut(s) 696
BmrFI CCNGG 1 cut(s) 578
BmsI GCATC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 583
BsaJI CCNNGG 1 cut(s) 577
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 151, 583
Bse1I ACTGG 3 cut(s) 111, 153, 265
Bse3DI GCAATG 3 cut(s) 284, 417, 632
BseBI CCWGG 1 cut(s) 578
BseCI ATCGAT 1 cut(s) 480
BseDI CCNNGG 1 cut(s) 577
BseGI GGATG 2 cut(s) 192, 304
BseLI CCNNNNNNNGG 3 cut(s) 106, 151, 583
BseMI GCAATG 3 cut(s) 284, 417, 632
BseMII CTCAG 2 cut(s) 326, 486
BseNI ACTGG 3 cut(s) 111, 153, 265
BseRI GAGGAG 1 cut(s) 599
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 2 cut(s) 418, 562
BshVI ATCGAT 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 414
BslI CCNNNNNNNGG 3 cut(s) 106, 151, 583
BsmAI GTCTC 2 cut(s) 462, 583
BsmI GAATGC 2 cut(s) 553, 671
Bso31I GGTCTC 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 2 cut(s) 481, 607
BspACI CCGC 4 cut(s) 196, 264, 563, 694
BspCNI CTCAG 2 cut(s) 327, 485
BspDI ATCGAT 1 cut(s) 480
BspMAI CTGCAG 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 583
BsrDI GCAATG 3 cut(s) 284, 417, 632
BsrI ACTGG 3 cut(s) 111, 153, 265
BssECI CCNNGG 1 cut(s) 577
BssMI GATC 2 cut(s) 481, 607
BssNAI GTATAC 1 cut(s) 217
Bst1107I GTATAC 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 2 cut(s) 221, 661
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 335, 472
BstF5I GGATG 2 cut(s) 192, 304
BstKTI GATC 2 cut(s) 484, 610
BstMAI GTCTC 2 cut(s) 462, 583
BstMBI GATC 2 cut(s) 481, 607
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 1 cut(s) 578
BstNSI RCATGY 3 cut(s) 99, 282, 396
BstSCI CCNGG 1 cut(s) 576
BstSFI CTRYAG 2 cut(s) 57, 432
BstSLI GKGCMC 1 cut(s) 414
BstV1I GCAGC 2 cut(s) 418, 562
BstZ17I GTATAC 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 480
BsuTUI ATCGAT 1 cut(s) 480
BtsCI GGATG 2 cut(s) 192, 304
Cac8I GCNNGC 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 696
ClaI ATCGAT 1 cut(s) 480
CviAII CATG 3 cut(s) 96, 279, 393
CviJI RGCY 6 cut(s) 82, 124, 274, 405, 431, 712
CviKI_1 RGCY 6 cut(s) 82, 124, 274, 405, 431, 712
DdeI CTNAG 2 cut(s) 335, 472
DpnI GATC 2 cut(s) 483, 609
DpnII GATC 2 cut(s) 481, 607
Eco31I GGTCTC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 576
EcoT22I ATGCAT 2 cut(s) 97, 194
FaeI CATG 3 cut(s) 99, 282, 396
FatI CATG 3 cut(s) 95, 278, 392
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 432, 551
FokI GGATG 2 cut(s) 179, 311
Fsp4HI GCNGC 2 cut(s) 432, 551
FspBI CTAG 2 cut(s) 360, 719
GluI GCNGC 2 cut(s) 432, 551
GsuI CTGGAG 1 cut(s) 128
Hin1II CATG 3 cut(s) 99, 282, 396
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 5 cut(s) 16, 461, 470, 488, 494
Hpy166II GTNNAC 3 cut(s) 217, 232, 412
Hpy188I TCNGA 3 cut(s) 336, 402, 493
Hpy188III TCNNGA 8 cut(s) 45, 134, 269, 360, 370, 458, 465, 485
Hpy8I GTNNAC 3 cut(s) 217, 232, 412
HpyAV CCTTC 2 cut(s) 338, 533
HpyCH4III ACNGT 2 cut(s) 221, 661
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 8 cut(s) 95, 192, 204, 310, 412, 434, 625, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 2 cut(s) 335, 472
HpySE526I ACGT 1 cut(s) 687
Hsp92II CATG 3 cut(s) 99, 282, 396
Kzo9I GATC 2 cut(s) 481, 607
LmnI GCTCC 1 cut(s) 271
Lsp1109I GCAGC 2 cut(s) 418, 562
LweI GCATC 1 cut(s) 201
MaeI CTAG 2 cut(s) 360, 719
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 2 cut(s) 140, 321
MalI GATC 2 cut(s) 483, 609
MboI GATC 2 cut(s) 481, 607
MboII GAAGA 2 cut(s) 528, 549
MfeI CAATTG 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 4 cut(s) 5, 159, 349, 355
MlyI GAGTC 2 cut(s) 464, 488
MnlI CCTC 5 cut(s) 52, 103, 289, 577, 702
Mph1103I ATGCAT 2 cut(s) 97, 194
MseI TTAA 1 cut(s) 447
MspR9I CCNGG 1 cut(s) 578
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 2 cut(s) 553, 671
MvaI CCWGG 1 cut(s) 578
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeII GATC 2 cut(s) 481, 607
NlaIII CATG 3 cut(s) 99, 282, 396
NmuCI GTSAC 2 cut(s) 140, 321
NsiI ATGCAT 2 cut(s) 97, 194
NspI RCATGY 3 cut(s) 99, 282, 396
PaeI GCATGC 1 cut(s) 99
PciI ACATGT 2 cut(s) 278, 392
PctI GAATGC 2 cut(s) 553, 671
PfeI GAWTC 3 cut(s) 16, 461, 488
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 2 cut(s) 433, 552
PleI GAGTC 2 cut(s) 464, 488
PpsI GAGTC 2 cut(s) 464, 488
PscI ACATGT 2 cut(s) 278, 392
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspPI GGNCC 1 cut(s) 696
PstI CTGCAG 1 cut(s) 436
PstNI CAGNNNCTG 1 cut(s) 274
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 2 cut(s) 432, 551
Sau3AI GATC 2 cut(s) 481, 607
Sau96I GGNCC 1 cut(s) 696
SchI GAGTC 2 cut(s) 464, 488
ScrFI CCNGG 1 cut(s) 578
SduI GDGCHC 1 cut(s) 414
SetI ASST 8 cut(s) 84, 126, 276, 318, 349, 407, 433, 690
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 2 cut(s) 57, 432
SinI GGWCC 1 cut(s) 696
SphI GCATGC 1 cut(s) 99
Sse9I AATT 4 cut(s) 5, 159, 349, 355
SsiI CCGC 4 cut(s) 196, 264, 563, 694
SspI AATATT 1 cut(s) 445
SspMI CTAG 2 cut(s) 360, 719
StyD4I CCNGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 221, 661
TaiI ACGT 1 cut(s) 690
TaqI TCGA 2 cut(s) 379, 480
TaqII GACCGA 1 cut(s) 607
TasI AATT 4 cut(s) 5, 159, 349, 355
TfiI GAWTC 3 cut(s) 16, 461, 488
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TseFI GTSAC 2 cut(s) 140, 321
TseI GCWGC 2 cut(s) 431, 550
Tsp45I GTSAC 2 cut(s) 140, 321
TspDTI ATGAA 4 cut(s) 8, 17, 273, 406
TspGWI ACGGA 1 cut(s) 172
Van91I CCANNNNNTGG 1 cut(s) 151
VneI GTGCAC 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 696
VspI ATTAAT 1 cut(s) 447
XbaI TCTAGA 1 cut(s) 359
XceI RCATGY 3 cut(s) 99, 282, 396
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 2 cut(s) 360, 719
Zsp2I ATGCAT 2 cut(s) 97, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.