Rh1BG007900

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0024757
Physical Location & Seq
Forward (+)
939458 .. 941297
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG007900.1

Sequence Viewer

Length: 921 bp
ATGCTGAAGTTGGACTACGACGACGTTTTGAGTGTTTGGTCCAACAAAGGCGGCGCCGATGGAAACGATGTCTCTGTATGTTTCTCATCTCTGGAGGGATTGGAGCGAGGCGGCGGCAGTGGTGGAGGTGAGGGAGGAGTCAGGGAAGATGGCGTAGAAAACGGGGTTGTCTGGAACGCGGGAGTTTTTGTGGGAGAAGATGGAGGCGGAGGATGCATTCTTGGGGGTTTCGGTTTCTTGAAGATGTTGGTCGGTCAATTCTTGGTCTTTGCTTTCCTCTTGCGTGGGTTATTTTGTAGAAGAGATCATATTCTTGGTGGAATCGCTTCCGCTGTGGTTTTCTACAGCTGCAAAACACATGTCATCCAATCTAAATCAAAATTGGGGAGGGAGGAAGTGATGTGGGGTCTCCAAAAATTTGAACAGAGTCGAGGCGGCGGAAAAGAATTGAGGGGATCATATAGAAATGAGCTCACTCTTTCTGAAACAGAGAGAAAAGAGAACAATAAGGGTACCTTATACGTAACGATAATAATGAAATATCTATGTTTCATACATTACAAAATAGATTATCCTCTTGAACGACATCAGGGAACTATAGATTTTCCTTGCCTGAAAAAGCTTTCCATTTATGCATGCCCCAAACTGGAGGGTGTGGTAGAGCTTGTGGTTCGTGAATGTGACCAACTGGTGGTTTCAATTGCCCACTATAAAGAACTTTCCGTATTATGCATCCGCTATTGCAAAGGGGTTGTATACAGAAGTGTGGTTGACTTTCAGTTATTAGATTTGGAGATAACTGGCTGTGAGGAGCTGACATGTTCATTGCCGAATGAGGATGGATTTCTGCAAAACCTTATGTCACTTCGTCATTTGAGTATTGAAGATACCGCCAAGTCTAAGGAGAATAGAGATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

306

Amino Acids

33.91

Weight (kDa)

5.78

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024757)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0315511
rosa_laevigata RLG00000030741
rosa_samantha Rh1BG007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 512
AccB1I GGYRCC 2 cut(s) 53, 512
AccB7I CCANNNNNTGG 1 cut(s) 691
AccI GTMKAC 1 cut(s) 756
AccII CGCG 1 cut(s) 179
AclWI GGATC 1 cut(s) 463
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 1 cut(s) 514
AfiI CCNNNNNNNGG 2 cut(s) 646, 691
AflIII ACRYGT 2 cut(s) 358, 818
AgsI TTSAA 5 cut(s) 241, 422, 581, 699, 884
AluBI AGCT 5 cut(s) 348, 472, 622, 664, 814
AluI AGCT 5 cut(s) 348, 472, 622, 664, 814
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 2 cut(s) 76, 413
AlwI GGATC 1 cut(s) 463
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 416
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
Asp700I GAANNNNTTC 1 cut(s) 325
Asp718I GGTACC 1 cut(s) 512
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 39
BanI GGYRCC 2 cut(s) 53, 512
BanII GRGCYC 1 cut(s) 474
BarI GAAGNNNNNNTAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 1 cut(s) 335
BccI CCATC 4 cut(s) 53, 143, 194, 833
BcoDI GTCTC 2 cut(s) 76, 413
BfmI CTRYAG 2 cut(s) 343, 597
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 5 cut(s) 52, 112, 115, 349, 436
BlsI GCNGC 5 cut(s) 53, 113, 116, 350, 437
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 55, 514
BmsI GCATC 2 cut(s) 203, 741
BpmI CTGGAG 2 cut(s) 113, 668
BsaAI YACGTR 1 cut(s) 523
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 413
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 646, 691
Bse1I ACTGG 3 cut(s) 651, 693, 805
Bse3DI GCAATG 1 cut(s) 824
BseGI GGATG 4 cut(s) 218, 363, 732, 844
BseLI CCNNNNNNNGG 2 cut(s) 646, 691
BseMI GCAATG 1 cut(s) 824
BseNI ACTGG 3 cut(s) 651, 693, 805
BseRI GAGGAG 2 cut(s) 150, 824
BseXI GCAGC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 179
BshNI GGYRCC 2 cut(s) 53, 512
BsiHKAI GWGCWC 1 cut(s) 474
BslI CCNNNNNNNGG 2 cut(s) 646, 691
BsmAI GTCTC 2 cut(s) 76, 413
BsmI GAATGC 1 cut(s) 216
Bso31I GGTCTC 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 2 cut(s) 304, 455
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 55, 514
BspPI GGATC 1 cut(s) 463
BspT107I GGYRCC 2 cut(s) 53, 512
BspTNI GGTCTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 824
BsrI ACTGG 3 cut(s) 651, 693, 805
BssMI GATC 2 cut(s) 304, 455
BssNAI GTATAC 1 cut(s) 757
BssNI GRCGYC 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 757
Bst6I CTCTTC 1 cut(s) 295
BstACI GRCGYC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 523
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 1 cut(s) 900
BstF5I GGATG 4 cut(s) 218, 363, 732, 844
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 307, 458
BstMAI GTCTC 2 cut(s) 76, 413
BstMBI GATC 2 cut(s) 304, 455
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNSI RCATGY 3 cut(s) 362, 639, 822
BstSFI CTRYAG 2 cut(s) 343, 597
BstSNI TACGTA 1 cut(s) 523
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 335
BstZ17I GTATAC 1 cut(s) 757
BtsCI GGATG 4 cut(s) 218, 363, 732, 844
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 637
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 513
CviAII CATG 3 cut(s) 359, 636, 819
CviJI RGCY 6 cut(s) 348, 472, 622, 664, 804, 814
CviKI_1 RGCY 6 cut(s) 348, 472, 622, 664, 804, 814
CviQI GTAC 1 cut(s) 513
DdeI CTNAG 1 cut(s) 900
DinI GGCGCC 1 cut(s) 55
DpnI GATC 2 cut(s) 306, 457
DpnII GATC 2 cut(s) 304, 455
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
EciI GGCGGA 2 cut(s) 222, 453
Ecl136II GAGCTC 1 cut(s) 472
Eco105I TACGTA 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 472
EcoT22I ATGCAT 3 cut(s) 218, 637, 734
EcoT38I GRGCYC 1 cut(s) 474
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
FaeI CATG 3 cut(s) 362, 639, 822
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FatI CATG 3 cut(s) 358, 635, 818
FauI CCCGC 1 cut(s) 172
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 5 cut(s) 52, 112, 115, 349, 436
FokI GGATG 4 cut(s) 225, 350, 719, 851
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 5 cut(s) 52, 112, 115, 349, 436
GlaI GCGC 1 cut(s) 55
GluI GCNGC 5 cut(s) 52, 112, 115, 349, 436
GsuI CTGGAG 2 cut(s) 113, 668
HaeII RGCGCY 1 cut(s) 57
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 3 cut(s) 362, 639, 822
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 3 cut(s) 138, 321, 427
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 757, 772
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 5 cut(s) 92, 172, 238, 578, 674
Hpy8I GTNNAC 2 cut(s) 757, 772
Hpy99I CGWCG 2 cut(s) 23, 26
HpyCH4IV ACGT 2 cut(s) 24, 522
HpyCH4V TGCA 6 cut(s) 216, 351, 635, 732, 744, 850
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 900
HpySE526I ACGT 2 cut(s) 24, 522
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 3 cut(s) 362, 639, 822
HspAI GCGC 1 cut(s) 54
KasI GGCGCC 1 cut(s) 53
KpnI GGTACC 1 cut(s) 516
Kzo9I GATC 2 cut(s) 304, 455
LmnI GCTCC 2 cut(s) 103, 811
LpnPI CCDG 8 cut(s) 77, 127, 157, 575, 626, 632, 674, 786
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 2 cut(s) 203, 741
MaeII ACGT 2 cut(s) 24, 522
MaeIII GTNAC 3 cut(s) 523, 680, 861
MalI GATC 2 cut(s) 306, 457
MboI GATC 2 cut(s) 304, 455
MboII GAAGA 5 cut(s) 158, 209, 253, 312, 896
MfeI CAATTG 1 cut(s) 699
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 5 cut(s) 257, 380, 416, 446, 699
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 2 cut(s) 147, 436
MmeI TCCRAC 1 cut(s) 66
Mph1103I ATGCAT 3 cut(s) 218, 637, 734
MroXI GAANNNNTTC 1 cut(s) 325
MspA1I CMGCKG 2 cut(s) 332, 348
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 216
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 213
NarI GGCGCC 1 cut(s) 54
NdeII GATC 2 cut(s) 304, 455
NlaIII CATG 3 cut(s) 362, 639, 822
NlaIV GGNNCC 2 cut(s) 55, 514
NmuCI GTSAC 2 cut(s) 680, 861
NsiI ATGCAT 3 cut(s) 218, 637, 734
NspI RCATGY 3 cut(s) 362, 639, 822
PaeI GCATGC 1 cut(s) 639
PciI ACATGT 2 cut(s) 358, 818
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 325
PfeI GAWTC 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 691
PkrI GCNGC 5 cut(s) 53, 113, 116, 350, 437
PleI GAGTC 2 cut(s) 146, 435
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 2 cut(s) 146, 435
Ppu21I YACGTR 1 cut(s) 523
PscI ACATGT 2 cut(s) 358, 818
Psp124BI GAGCTC 1 cut(s) 474
PspN4I GGNNCC 2 cut(s) 55, 514
PspPI GGNCC 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 348
RsaI GTAC 1 cut(s) 514
RsaNI GTAC 1 cut(s) 513
SacI GAGCTC 1 cut(s) 474
SatI GCNGC 5 cut(s) 52, 112, 115, 349, 436
Sau3AI GATC 2 cut(s) 304, 455
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 2 cut(s) 147, 436
SduI GDGCHC 1 cut(s) 474
SfaNI GCATC 2 cut(s) 203, 741
SfcI CTRYAG 2 cut(s) 343, 597
SfoI GGCGCC 1 cut(s) 55
SinI GGWCC 1 cut(s) 39
SnaBI TACGTA 1 cut(s) 523
SphI GCATGC 1 cut(s) 639
Sse9I AATT 5 cut(s) 257, 380, 416, 446, 699
SspDI GGCGCC 1 cut(s) 53
SstI GAGCTC 1 cut(s) 474
TaiI ACGT 2 cut(s) 27, 525
TaqI TCGA 1 cut(s) 430
TaqII GACCGA 1 cut(s) 242
TasI AATT 5 cut(s) 257, 380, 416, 446, 699
TauI GCSGC 4 cut(s) 54, 114, 117, 438
TfiI GAWTC 1 cut(s) 321
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 2 cut(s) 680, 861
TseI GCWGC 1 cut(s) 348
Tsp45I GTSAC 2 cut(s) 680, 861
TspDTI ATGAA 3 cut(s) 541, 551, 813
TspGWI ACGGA 1 cut(s) 712
TspRI CASTG 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 691
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 416
XceI RCATGY 3 cut(s) 362, 639, 822
XmiI GTMKAC 1 cut(s) 756
XmnI GAANNNNTTC 1 cut(s) 325
Zsp2I ATGCAT 3 cut(s) 218, 637, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.