RLG00000031786

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0030969
Physical Location & Seq
Forward (+)
8213420 .. 8217883
4464 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031786

Sequence Viewer

Length: 567 bp
ATGACAGCGACATTGGCATTGGTAGAGGATGTAGTTGTGGAGTTTGGGCTTTTGGGATCTACGGCGGTAAAGGAAGAGGATTTTTATCTGGTTGAAAGTATGATGTTTTGTAAGCAAGGGATGATCATGGCATCCCAAAGTGCAGCGAAGTTGGGTCAGGTTTCTAAGGTGAAAGAGGCTAGGGTTTTGACCCAAAGTGCGGTGGGGACCTCGGTGGAGGAGGCTAGGGCTCCAACAATTGCAATGCAACTTTTGTTCTCCATGAAAGATCTGGACGTGATTCCGGGGCCAAAACCTAATAAGACTCGGTTTCCAAAGATAGTGGCTGACAGGGATGGGGTTATTGCTGAGGCAGGGGCAGTTGAGGCAACTGTTGCTGCTATGAAAGTGGATATCCGTAGAGTAGTACTGGGAGGCATAATGGATGGACTGGTATGGCCAGAATGCTTTGTAAATCTCGCAGATAAAATCATGGCGGTGTTCTTTAGATTCGCTGATGCCCGGAGCATCAAAAGAGCCACACTTCAAATTGAAGGAAACTCAGATGATGGGGTGCCACCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

189

Amino Acids

20.22

Weight (kDa)

5.13

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030969)

Species Orthologous Gene IDs
rosa_laevigata RLG00000031786
rosa_multiflora Rmu_sc0000999.1_g000033

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 553
AciI CCGC 3 cut(s) 65, 200, 476
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 437
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 3 cut(s) 95, 527, 533
AjiI CACGTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 64
AoxI GGCC 2 cut(s) 287, 437
ApeKI GCWGC 2 cut(s) 143, 377
AspS9I GGNCC 2 cut(s) 207, 287
AsuC2I CCSGG 2 cut(s) 285, 502
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 207
BalI TGGCCA 1 cut(s) 439
BanI GGYRCC 1 cut(s) 553
BanII GRGCYC 1 cut(s) 232
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 155, 364
BccI CCATC 3 cut(s) 329, 419, 542
BceAI ACGGC 1 cut(s) 78
BclI TGATCA 1 cut(s) 123
BcnI CCSGG 2 cut(s) 285, 502
BfaI CTAG 2 cut(s) 180, 225
BglII AGATCT 1 cut(s) 268
BisI GCNGC 2 cut(s) 144, 378
BlsI GCNGC 2 cut(s) 145, 379
BmcAI AGTACT 1 cut(s) 408
Bme1390I CCNGG 2 cut(s) 285, 502
Bme18I GGWCC 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 207, 287
BmiI GGNNCC 4 cut(s) 208, 231, 288, 555
BmrFI CCNGG 2 cut(s) 285, 502
BmrI ACTGGG 1 cut(s) 419
BmsI GCATC 3 cut(s) 140, 487, 516
BmuI ACTGGG 1 cut(s) 419
Bpu10I CCTNAGC 1 cut(s) 348
BpuMI CCSGG 2 cut(s) 285, 502
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 210, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 414, 435
Bse3DI GCAATG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 210, 284
BseGI GGATG 5 cut(s) 34, 126, 131, 340, 430
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 339, 555
BseNI ACTGG 2 cut(s) 414, 435
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 155, 364
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 2 cut(s) 289, 439
BshNI GGYRCC 1 cut(s) 553
BsiSI CCGG 2 cut(s) 284, 502
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 2 cut(s) 289, 439
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 3 cut(s) 56, 123, 268
BspACI CCGC 3 cut(s) 65, 200, 476
BspANI GGCC 2 cut(s) 289, 439
BspCNI CTCAG 2 cut(s) 340, 554
BspLI GGNNCC 4 cut(s) 208, 231, 288, 555
BspPI GGATC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 553
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 2 cut(s) 414, 435
BssECI CCNNGG 2 cut(s) 210, 284
BssMI GATC 3 cut(s) 56, 123, 268
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 374
BstDEI CTNAG 3 cut(s) 165, 348, 541
BstF5I GGATG 5 cut(s) 34, 126, 131, 340, 430
BstKTI GATC 3 cut(s) 59, 126, 271
BstMBI GATC 3 cut(s) 56, 123, 268
BstMWI GCNNNNNNNGC 3 cut(s) 14, 365, 374
BstSCI CCNGG 2 cut(s) 283, 500
BstV1I GCAGC 2 cut(s) 155, 364
BstX2I RGATCY 2 cut(s) 56, 268
BstYI RGATCY 2 cut(s) 56, 268
BsuRI GGCC 2 cut(s) 289, 439
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 5 cut(s) 34, 126, 131, 340, 430
Cfr13I GGNCC 2 cut(s) 207, 287
Csp6I GTAC 1 cut(s) 407
CspCI CAANNNNNGTGG 2 cut(s) 303, 338
CviAII CATG 4 cut(s) 127, 262, 472, 564
CviJI RGCY 8 cut(s) 49, 179, 224, 230, 289, 326, 439, 518
CviKI_1 RGCY 8 cut(s) 49, 179, 224, 230, 289, 326, 439, 518
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 3 cut(s) 165, 348, 541
DpnI GATC 3 cut(s) 58, 125, 270
DpnII GATC 3 cut(s) 56, 123, 268
EaeI YGGCCR 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 232
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 207
EcoRV GATATC 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 232
FaeI CATG 4 cut(s) 130, 265, 475, 567
FaiI YATR 8 cut(s) 101, 128, 263, 383, 419, 436, 473, 565
FaqI GGGAC 1 cut(s) 220
FatI CATG 4 cut(s) 126, 261, 471, 563
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 144, 378
FokI GGATG 5 cut(s) 41, 118, 133, 347, 437
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 2 cut(s) 144, 378
FspBI CTAG 2 cut(s) 180, 225
GluI GCNGC 2 cut(s) 144, 378
HaeIII GGCC 2 cut(s) 289, 439
HapII CCGG 2 cut(s) 284, 502
Hin1II CATG 4 cut(s) 130, 265, 475, 567
HinfI GANTC 3 cut(s) 280, 304, 489
HpaII CCGG 2 cut(s) 284, 502
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 527
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 143, 242, 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 365, 374
HpyF3I CTNAG 3 cut(s) 165, 348, 541
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 4 cut(s) 130, 265, 475, 567
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 3 cut(s) 56, 123, 268
LmnI GCTCC 2 cut(s) 235, 504
Lsp1109I GCAGC 2 cut(s) 155, 364
LweI GCATC 3 cut(s) 140, 487, 516
MaeI CTAG 2 cut(s) 180, 225
MaeII ACGT 1 cut(s) 276
MalI GATC 3 cut(s) 58, 125, 270
MboI GATC 3 cut(s) 56, 123, 268
MboII GAAGA 1 cut(s) 86
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 2 cut(s) 56, 268
MhlI GDGCHC 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 2 cut(s) 237, 528
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 9 cut(s) 19, 70, 169, 211, 214, 220, 343, 358, 407
Mox20I TGGCCA 1 cut(s) 439
MscI TGGCCA 1 cut(s) 439
MslI CAYNNNNRTG 2 cut(s) 476, 562
Msp20I TGGCCA 1 cut(s) 439
MspI CCGG 2 cut(s) 284, 502
MspR9I CCNGG 2 cut(s) 285, 502
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 449
MwoI GCNNNNNNNGC 3 cut(s) 14, 365, 374
NciI CCSGG 2 cut(s) 285, 502
NdeII GATC 3 cut(s) 56, 123, 268
NlaIII CATG 4 cut(s) 130, 265, 475, 567
NlaIV GGNNCC 4 cut(s) 208, 231, 288, 555
PctI GAATGC 1 cut(s) 449
PfeI GAWTC 2 cut(s) 280, 489
PkrI GCNGC 2 cut(s) 145, 379
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 207
PspN4I GGNNCC 4 cut(s) 208, 231, 288, 555
PspPI GGNCC 2 cut(s) 207, 287
PspPPI RGGWCCY 1 cut(s) 207
PsuI RGATCY 2 cut(s) 56, 268
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 2 cut(s) 476, 562
SatI GCNGC 2 cut(s) 144, 378
Sau3AI GATC 3 cut(s) 56, 123, 268
Sau96I GGNCC 2 cut(s) 207, 287
ScaI AGTACT 1 cut(s) 408
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 2 cut(s) 285, 502
SduI GDGCHC 1 cut(s) 232
SetI ASST 5 cut(s) 162, 171, 212, 279, 298
SfaNI GCATC 3 cut(s) 140, 487, 516
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 476, 562
Sse9I AATT 2 cut(s) 237, 528
SsiI CCGC 3 cut(s) 65, 200, 476
SspMI CTAG 2 cut(s) 180, 225
StyD4I CCNGG 2 cut(s) 283, 500
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 279
TasI AATT 2 cut(s) 237, 528
TatI WGTACW 1 cut(s) 406
TfiI GAWTC 2 cut(s) 280, 489
TseI GCWGC 2 cut(s) 143, 377
TspDTI ATGAA 2 cut(s) 278, 398
TspGWI ACGGA 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XspI CTAG 2 cut(s) 180, 225
ZrmI AGTACT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.