Rmu_sc0000999.1_g000033

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000999.1
OG0030969
Physical Location & Seq
Forward (+)
97037 .. 99732
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000999.1_g000033.1.cds

Sequence Viewer

Length: 705 bp
atgtttcgacttgcttctattccaggctccctcaatttggattcgaatcataacaggtctcccacctcaagccataactctttggatacacactttgaactcgcagtatcagagaagaaattctgcgaacaagtattgggaggcataatggaggacttggtgtccagatctctagcgactttggaaggccaacttgaggaagtggcgatggaggctgaagaagctgagggttgcttaggcgatttggtggatatccgtagagtagtactaggaggcataatggatggactggtatggccagaatgctttgtaaatctcgcagataaaatcatggcggtgttcttcagattcacagttgcttggagtagcaaagagccacaaaaacttgaacaaacagtctgggcttcaaatggcgtgcctaaagctaggagtatggaatcgggaggtgtactgcatcttctctctcggtggatgggattggctgaatcgtggctgcaggctgggattggagggagattgagggtttaccgagtcagagcagtgtttgatgggggtcaggggtcagcggtgctgtttagtgcagcttgggaacggggatggttggcgtcaatcgtcgatgcctggataacgtcaaactcgcattgttggcctgacgctagtgctggggaggctgacttggaggcagcgcattgcagcaattgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

234

Amino Acids

25.54

Weight (kDa)

4.98

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030969)

Species Orthologous Gene IDs
rosa_laevigata RLG00000031786
rosa_multiflora Rmu_sc0000999.1_g000033

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 335, 566
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 237, 328
AcyI GRCGYC 1 cut(s) 605
AfaI GTAC 2 cut(s) 267, 450
AfiI CCNNNNNNNGG 2 cut(s) 37, 196
AgsI TTSAA 3 cut(s) 98, 389, 408
AhdI GACNNNNNGTC 1 cut(s) 160
AjnI CCWGG 2 cut(s) 22, 620
AluBI AGCT 3 cut(s) 224, 425, 584
AluI AGCT 3 cut(s) 224, 425, 584
Alw26I GTCTC 1 cut(s) 63
AoxI GGCC 3 cut(s) 187, 296, 647
ApeKI GCWGC 4 cut(s) 493, 581, 683, 693
ApoI RAATTY 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 688
AsuII TTCGAA 1 cut(s) 44
BalI TGGCCA 1 cut(s) 298
BarI GAAGNNNNNNTAC 2 cut(s) 441, 473
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 480, 593, 695
BccI CCATC 5 cut(s) 202, 278, 466, 542, 591
BciT130I CCWGG 2 cut(s) 24, 622
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 5 cut(s) 173, 269, 426, 657, 703
BfmI CTRYAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 79
BglII AGATCT 1 cut(s) 167
BisI GCNGC 4 cut(s) 494, 582, 684, 694
BlsI GCNGC 4 cut(s) 495, 583, 685, 695
BmcAI AGTACT 1 cut(s) 267
Bme1390I CCNGG 2 cut(s) 24, 622
BmeRI GACNNNNNGTC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 24, 622
BmsI GCATC 2 cut(s) 463, 607
Bpu10I CCTNAGC 2 cut(s) 225, 235
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 52, 215
BsaBI GATNNNNATC 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 63
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 196
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 688
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 2 cut(s) 24, 622
BseGI GGATG 3 cut(s) 289, 477, 602
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 37, 196
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 3 cut(s) 480, 593, 695
BseYI CCCAGC 2 cut(s) 500, 662
BsgI GTGCAG 1 cut(s) 600
BshFI GGCC 3 cut(s) 189, 298, 649
BslI CCNNNNNNNGG 2 cut(s) 37, 196
BsmAI GTCTC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 3 cut(s) 189, 298, 649
Bso31I GGTCTC 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 44
Bsp143I GATC 1 cut(s) 167
BspACI CCGC 2 cut(s) 335, 566
BspANI GGCC 3 cut(s) 189, 298, 649
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 498
BspT104I TTCGAA 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 688
BsrI ACTGG 1 cut(s) 294
BssMI GATC 1 cut(s) 167
BssNI GRCGYC 1 cut(s) 605
Bst2UI CCWGG 2 cut(s) 24, 622
Bst4CI ACNGT 2 cut(s) 355, 397
BstACI GRCGYC 1 cut(s) 605
BstAPI GCANNNNNTGC 1 cut(s) 699
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 416, 498
BstDEI CTNAG 2 cut(s) 225, 235
BstF5I GGATG 3 cut(s) 289, 477, 602
BstHHI GCGC 1 cut(s) 688
BstKTI GATC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 167
BstMWI GCNNNNNNNGC 5 cut(s) 212, 221, 646, 668, 699
BstNI CCWGG 2 cut(s) 24, 622
BstSCI CCNGG 2 cut(s) 22, 620
BstSFI CTRYAG 1 cut(s) 494
BstV1I GCAGC 3 cut(s) 480, 593, 695
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 3 cut(s) 189, 298, 649
BtgZI GCGATG 1 cut(s) 221
BtsCI GGATG 3 cut(s) 289, 477, 602
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 2 cut(s) 416, 498
CfoI GCGC 1 cut(s) 688
CseI GACGC 2 cut(s) 594, 662
Csp6I GTAC 2 cut(s) 266, 449
CviAII CATG 1 cut(s) 331
CviQI GTAC 2 cut(s) 266, 449
DdeI CTNAG 2 cut(s) 225, 235
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
DriI GACNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 296
Eam1105I GACNNNNNGTC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 63
Eco32I GATATC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 237, 328
EcoRII CCWGG 2 cut(s) 22, 620
EcoRV GATATC 1 cut(s) 253
FaeI CATG 1 cut(s) 334
FaiI YATR 7 cut(s) 51, 75, 146, 278, 295, 332, 434
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 1 cut(s) 330
Fnu4HI GCNGC 4 cut(s) 494, 582, 684, 694
FokI GGATG 3 cut(s) 296, 484, 609
Fsp4HI GCNGC 4 cut(s) 494, 582, 684, 694
FspBI CTAG 5 cut(s) 173, 269, 426, 657, 703
GlaI GCGC 1 cut(s) 687
GluI GCNGC 4 cut(s) 494, 582, 684, 694
GsaI CCCAGC 2 cut(s) 504, 666
HaeIII GGCC 3 cut(s) 189, 298, 649
HgaI GACGC 2 cut(s) 594, 662
HhaI GCGC 1 cut(s) 688
Hin1I GRCGYC 1 cut(s) 605
Hin1II CATG 1 cut(s) 334
Hin6I GCGC 1 cut(s) 686
HinP1I GCGC 1 cut(s) 686
HinfI GANTC 6 cut(s) 41, 46, 348, 437, 485, 531
Hpy166II GTNNAC 2 cut(s) 449, 526
Hpy188I TCNGA 3 cut(s) 112, 347, 536
Hpy188III TCNNGA 2 cut(s) 165, 441
Hpy8I GTNNAC 2 cut(s) 449, 526
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 355, 397
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 4 cut(s) 454, 496, 581, 693
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 221, 646, 668, 699
HpyF3I CTNAG 2 cut(s) 225, 235
HpySE526I ACGT 1 cut(s) 629
Hsp92I GRCGYC 1 cut(s) 605
Hsp92II CATG 1 cut(s) 334
HspAI GCGC 1 cut(s) 686
Kzo9I GATC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 3 cut(s) 480, 593, 695
LweI GCATC 2 cut(s) 463, 607
MaeI CTAG 5 cut(s) 173, 269, 426, 657, 703
MaeII ACGT 1 cut(s) 629
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MboII GAAGA 4 cut(s) 127, 230, 334, 449
MfeI CAATTG 1 cut(s) 697
MflI RGATCY 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 298
MluCI AATT 3 cut(s) 34, 119, 697
MluNI TGGCCA 1 cut(s) 298
MlyI GAGTC 1 cut(s) 540
Mox20I TGGCCA 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 119
MscI TGGCCA 1 cut(s) 298
MslI CAYNNNNRTG 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 298
MspA1I CMGCKG 1 cut(s) 566
MspR9I CCNGG 2 cut(s) 24, 622
MunI CAATTG 1 cut(s) 697
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 2 cut(s) 24, 622
MwoI GCNNNNNNNGC 5 cut(s) 212, 221, 646, 668, 699
NdeII GATC 1 cut(s) 167
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 28
NspV TTCGAA 1 cut(s) 44
PctI GAATGC 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 5 cut(s) 41, 46, 348, 437, 485
PkrI GCNGC 4 cut(s) 495, 583, 685, 695
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
Psp6I CCWGG 2 cut(s) 22, 620
PspFI CCCAGC 2 cut(s) 500, 662
PspGI CCWGG 2 cut(s) 22, 620
PspN4I GGNNCC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 498
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 2 cut(s) 267, 450
RsaNI GTAC 2 cut(s) 266, 449
RseI CAYNNNNRTG 1 cut(s) 335
SatI GCNGC 4 cut(s) 494, 582, 684, 694
Sau3AI GATC 1 cut(s) 167
ScaI AGTACT 1 cut(s) 267
SchI GAGTC 1 cut(s) 540
ScrFI CCNGG 2 cut(s) 24, 622
SetI ASST 7 cut(s) 59, 68, 226, 427, 448, 586, 632
SfaNI GCATC 2 cut(s) 463, 607
SfcI CTRYAG 1 cut(s) 494
SfuI TTCGAA 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 67, 194
SmoI CTYRAG 2 cut(s) 67, 194
Sse9I AATT 3 cut(s) 34, 119, 697
SsiI CCGC 2 cut(s) 335, 566
SspMI CTAG 5 cut(s) 173, 269, 426, 657, 703
StyD4I CCNGG 2 cut(s) 22, 620
TaaI ACNGT 2 cut(s) 355, 397
TaiI ACGT 1 cut(s) 632
TaqI TCGA 3 cut(s) 7, 44, 615
TasI AATT 3 cut(s) 34, 119, 697
TatI WGTACW 2 cut(s) 265, 448
TfiI GAWTC 5 cut(s) 41, 46, 348, 437, 485
TscAI CASTG 1 cut(s) 546
TseI GCWGC 4 cut(s) 493, 581, 683, 693
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 546
XapI RAATTY 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 5 cut(s) 173, 269, 426, 657, 703
ZrmI AGTACT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.