Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0030932

Physical Location & Seq

Genomic Coordinates Reverse (-)

10172049 .. 10172402

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032009

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAGTCTCATAGAGTCAGTTTGGTCATAGTCATAGTCATAGTCTGTTCTGTTCTACTTGCTGGTCTATCCGCTCAGCCAAGCTTGGAGGTTGAAGTCGAGGCCCTGAAGGCATTCAAGAAATCCATCACCAGCGACCCCAATGGAACACTTGCAGATTGGACGTCAGACGCAGGCCATCACTGCAATTGGTCTGGCATTGCCTGTGACCCCTCAACAAATCAAGTCATTACAAACCCAGAGGTTTTCCCAGTCTTTAACTTTATTAACCAGCTAAAAAAGTCGAGGTTAAGGCAATCCGCCTCTGATTCTGATATCTGTAGTTCAGTAAATAACATTTACCAACATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

118

Amino Acids

12.76

Weight (kDa)

5.69

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 70	1.9e-12	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0030932)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000032009
rosa_samantha	Rh5AG103600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	74
AciI	CCGC	2 cut(s)	72, 300
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	95, 118
AluBI	AGCT	2 cut(s)	84, 274
AluI	AGCT	2 cut(s)	84, 274
Alw26I	GTCTC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	102, 175
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	121
BccI	CCATC	2 cut(s)	134, 186
BcoDI	GTCTC	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	110
BlpI	GCTNAGC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	103
BmrI	ACTGGG	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	104, 177
BsmAI	GTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	104, 177
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	2 cut(s)	72, 300
BspANI	GGCC	2 cut(s)	104, 177
BspCNI	CTCAG	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	251
BssNI	GRCGYC	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 183
BstSFI	CTRYAG	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	104, 177
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	179
CviJI	RGCY	5 cut(s)	79, 84, 104, 177, 274
CviKI_1	RGCY	5 cut(s)	79, 84, 104, 177, 274
DdeI	CTNAG	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	289
Eco32I	GATATC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	316
FaiI	YATR	5 cut(s)	12, 29, 35, 41, 348
HaeIII	GGCC	2 cut(s)	104, 177
HgaI	GACGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	3 cut(s)	5, 15, 308
HphI	GGTGA	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	169, 307, 313
Hpy188III	TCNNGA	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	2 cut(s)	155, 186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 183
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	164
LpnPI	CCDG	9 cut(s)	48, 119, 145, 159, 180, 217, 252, 264, 284
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	206
MbiI	CCGCTC	1 cut(s)	74
MfeI	CAATTG	1 cut(s)	187
MluCI	AATT	2 cut(s)	187, 349
MlyI	GAGTC	2 cut(s)	14, 24
MnlI	CCTC	6 cut(s)	82, 94, 223, 235, 279, 313
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	4 cut(s)	258, 267, 290, 352
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	110, 183
NmuCI	GTSAC	1 cut(s)	206
PctI	GAATGC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	308
PleI	GAGTC	2 cut(s)	13, 23
PpsI	GAGTC	2 cut(s)	13, 23
PspPI	GGNCC	1 cut(s)	103
SaqAI	TTAA	4 cut(s)	258, 267, 290, 352
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	14, 24
SetI	ASST	6 cut(s)	86, 93, 167, 246, 276, 290
SfcI	CTRYAG	1 cut(s)	319
Sse9I	AATT	2 cut(s)	187, 349
SsiI	CCGC	2 cut(s)	72, 300
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	99, 284
TasI	AATT	2 cut(s)	187, 349
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	4 cut(s)	258, 267, 290, 352
Tru9I	TTAA	4 cut(s)	258, 267, 290, 352
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspRI	CASTG	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	113
ZraI	GACGTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.