Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0030932

Physical Location & Seq

Genomic Coordinates Reverse (-)

9524132 .. 9532844

Gene Structure 8713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGTCTCATAGAGTCAGTTTGGTCATAGTCATAGTCTGTTCTGTTCTACTTGCTGGTCTGTCTGCTCAGCCAAGCTTGGAGGTTGAAGTCGAGGCCTTGAAGGCGTTCAAGAAATCCATCACCAGCGACCCGAATGGAACACTTGCAGATTGGACGTCAGACGCAAGCCATCACTGCAATTGGTCTGGCGTTGCCTGTGACCCCTCGACAAATCAAGTCATTTCAATTTCTCTGGCAGAAAAGCAGCTCACAGGCGTGATCTCACCCTTCCTCGGAAACATTTCAGGCCTCCAGCTGAAATCATTAACCCATTTAGGACTTTCAGAAAATGAGTTAACTGGGACAATACCATCCGAGCTTGGATCTTTAAGATCATTGCAAGTATTGACCCTGCACTCCAATAAGTTTACCGGAGAGATCCCCTCATCCTTGACAAGCTTGACAAATCTAACATATCTGTCAATGAGCTTAAATTCTCTAACAGGGGAACTTCCATCAAACATAGGGTTGCTTTATAATCTTAAAAACCTCTCCATGAATGGCAACCTTCTTGAGGGATCCATACCATCTAGTATCACCAACTGTACCAATCTTCAAGTTATAAGCTTGGCTTATAATAGAATAACTGGAAAAATACCTCAGGGTCTGGGGCAGTTGCCGAAGCTTAATTTCCTTTCTGTTGGATCCAATAAATTGTTCGGAGAAATCCCAGATGACCTCTTCAATTGCACTAGTCTTCTCACTCTAGATTTGGGCCTGAACAACTTTAGTGGTTATCTGAAACCTGGATTTGGAAAACTTTCCAATCTCAGGGTTTTGAGAGCCACCTCCAATTCATTTGTCGGACAAATTCCACCAGAGATTGGCCAACTAAACCAACTTATCATCCTCACACTTGCTGAGAATAGATTCTCAGGTCCAGTTCCACCACAGCTGTCTAATCTCTCTCACCTACAAGGGCTATCCCTGCACGACAATGCTTTAGAAGGAGCCATCCCTGAGAACTTTTTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

339

Amino Acids

36.14

Weight (kDa)

5.63

Isoelectric Point (pI)

28.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 68	1.6e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	100 - 180	1.8e-08	Leucine-rich repeat region
LRR_14	PF23598	168 - 277	2.1e-08	Leucine-rich repeat region
LRR_8	PF13855	174 - 233	6e-08	Leucine rich repeat
LRR_4	PF12799	197 - 237	4.7e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0030932)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000032009
rosa_samantha	Rh5AG103600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	519, 605, 618
AatII	GACGTC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	866
AclWI	GGATC	6 cut(s)	373, 415, 555, 568, 681, 694
AcoI	YGGCCR	1 cut(s)	868
AcsI	RAATTY	2 cut(s)	475, 852
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	1 cut(s)	589
AfiI	CCNNNNNNNGG	5 cut(s)	275, 556, 794, 813, 866
AgsI	TTSAA	6 cut(s)	89, 103, 112, 228, 599, 727
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	1 cut(s)	787
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AleI	CACNNNNGTG	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	6 cut(s)	373, 415, 555, 568, 681, 694
AlwNI	CAGNNNCTG	1 cut(s)	649
AoxI	GGCC	4 cut(s)	96, 289, 757, 868
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	2 cut(s)	475, 852
Asp700I	GAANNNNTTC	4 cut(s)	107, 283, 802, 911
AspS9I	GGNCC	2 cut(s)	757, 920
AsuHPI	GGTGA	4 cut(s)	115, 258, 571, 944
AvaII	GGWCC	1 cut(s)	920
AxyI	CCTNAGG	1 cut(s)	642
BalI	TGGCCA	1 cut(s)	870
BamHI	GGATCC	2 cut(s)	560, 686
BbsI	GAAGAC	1 cut(s)	731
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	6 cut(s)	128, 180, 361, 505, 577, 1004
BciT130I	CCWGG	1 cut(s)	789
BcoDI	GTCTC	1 cut(s)	12
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	3 cut(s)	573, 735, 749
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	248
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	789
Bme18I	GGWCC	1 cut(s)	920
BmgT120I	GGNCC	2 cut(s)	757, 920
BmiI	GGNNCC	3 cut(s)	562, 688, 994
BmrFI	CCNGG	1 cut(s)	789
BmrI	ACTGGG	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	731
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpmI	CTGGAG	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	5 cut(s)	275, 556, 794, 813, 866
Bse1I	ACTGG	3 cut(s)	346, 634, 923
Bse21I	CCTNAGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	789
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	4 cut(s)	353, 428, 888, 996
BseLI	CCNNNNNNNGG	5 cut(s)	275, 556, 794, 813, 866
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	6 cut(s)	83, 656, 826, 894, 930, 993
BseNI	ACTGG	3 cut(s)	346, 634, 923
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	2 cut(s)	380, 956
BshFI	GGCC	4 cut(s)	98, 291, 759, 870
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	5 cut(s)	275, 556, 794, 813, 866
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	4 cut(s)	98, 291, 759, 870
Bsp143I	GATC	6 cut(s)	261, 365, 374, 420, 560, 686
Bsp1720I	GCTNAGC	1 cut(s)	69
BspANI	GGCC	4 cut(s)	98, 291, 759, 870
BspCNI	CTCAG	6 cut(s)	82, 655, 825, 895, 929, 994
BspLI	GGNNCC	3 cut(s)	562, 688, 994
BspPI	GGATC	6 cut(s)	373, 415, 555, 568, 681, 694
BsrDI	GCAATG	1 cut(s)	377
BsrI	ACTGG	3 cut(s)	346, 634, 923
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	6 cut(s)	261, 365, 374, 420, 560, 686
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	728
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	6 cut(s)	69, 642, 812, 903, 916, 1002
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	4 cut(s)	353, 428, 888, 996
BstKTI	GATC	6 cut(s)	264, 368, 377, 423, 563, 689
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	6 cut(s)	261, 365, 374, 420, 560, 686
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 177, 970
BstNI	CCWGG	1 cut(s)	789
BstSCI	CCNGG	1 cut(s)	787
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	731
BstX2I	RGATCY	4 cut(s)	365, 420, 560, 686
BstYI	RGATCY	4 cut(s)	365, 420, 560, 686
Bsu36I	CCTNAGG	1 cut(s)	642
BsuRI	GGCC	4 cut(s)	98, 291, 759, 870
BtsCI	GGATG	4 cut(s)	353, 428, 888, 996
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	169
CaiI	CAGNNNCTG	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	757, 920
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	588
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	1 cut(s)	538
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	6 cut(s)	69, 642, 812, 903, 916, 1002
DpnI	GATC	6 cut(s)	263, 367, 376, 422, 562, 688
DpnII	GATC	6 cut(s)	261, 365, 374, 420, 560, 686
EaeI	YGGCCR	1 cut(s)	868
Eam1104I	CTCTTC	1 cut(s)	728
EarI	CTCTTC	1 cut(s)	728
Eco147I	AGGCCT	2 cut(s)	98, 291
Eco47I	GGWCC	1 cut(s)	920
Eco81I	CCTNAGG	1 cut(s)	642
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	787
FaeI	CATG	1 cut(s)	541
FalI	AAGNNNNNCTT	2 cut(s)	598, 630
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	1 cut(s)	537
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	4 cut(s)	340, 415, 875, 983
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	3 cut(s)	573, 735, 749
GluI	GCNGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	4 cut(s)	98, 291, 759, 870
HapII	CCGG	1 cut(s)	414
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	541
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HindIII	AAGCTT	4 cut(s)	76, 439, 607, 665
HinfI	GANTC	3 cut(s)	5, 15, 912
HpaI	GTTAAC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	4 cut(s)	115, 258, 571, 944
Hpy166II	GTNNAC	2 cut(s)	339, 411
Hpy188I	TCNGA	7 cut(s)	163, 278, 328, 358, 704, 783, 848
Hpy188III	TCNNGA	3 cut(s)	112, 554, 749
Hpy8I	GTNNAC	2 cut(s)	339, 411
HpyAV	CCTTC	4 cut(s)	97, 280, 560, 983
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	6 cut(s)	149, 180, 382, 397, 732, 973
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 177, 970
HpyF3I	CTNAG	6 cut(s)	69, 642, 812, 903, 916, 1002
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	541
KspAI	GTTAAC	1 cut(s)	339
Kzo9I	GATC	6 cut(s)	261, 365, 374, 420, 560, 686
LmnI	GCTCC	1 cut(s)	992
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	3 cut(s)	573, 735, 749
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	6 cut(s)	263, 367, 376, 422, 562, 688
MboI	GATC	6 cut(s)	261, 365, 374, 420, 560, 686
MboII	GAAGA	3 cut(s)	587, 715, 731
MfeI	CAATTG	2 cut(s)	181, 727
MflI	RGATCY	4 cut(s)	365, 420, 560, 686
MlsI	TGGCCA	1 cut(s)	870
MluCI	AATT	8 cut(s)	181, 228, 475, 670, 695, 727, 835, 852
MluNI	TGGCCA	1 cut(s)	870
MlyI	GAGTC	2 cut(s)	14, 24
MmeI	TCCRAC	2 cut(s)	664, 826
Mox20I	TGGCCA	1 cut(s)	870
MroXI	GAANNNNTTC	4 cut(s)	107, 283, 802, 911
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	6 cut(s)	308, 338, 371, 473, 525, 669
MslI	CAYNNNNRTG	2 cut(s)	257, 978
Msp20I	TGGCCA	1 cut(s)	870
MspA1I	CMGCKG	2 cut(s)	298, 937
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	789
MunI	CAATTG	2 cut(s)	181, 727
MvaI	CCWGG	1 cut(s)	789
MwoI	GCNNNNNNNGC	3 cut(s)	104, 177, 970
NdeII	GATC	6 cut(s)	261, 365, 374, 420, 560, 686
NlaIII	CATG	1 cut(s)	541
NlaIV	GGNNCC	3 cut(s)	562, 688, 994
NmuCI	GTSAC	1 cut(s)	200
OliI	CACNNNNGTG	1 cut(s)	257
PceI	AGGCCT	2 cut(s)	98, 291
PdmI	GAANNNNTTC	4 cut(s)	107, 283, 802, 911
PfeI	GAWTC	1 cut(s)	912
PflMI	CCANNNNNTGG	1 cut(s)	866
PkrI	GCNGC	1 cut(s)	249
PleI	GAGTC	2 cut(s)	13, 23
PpsI	GAGTC	2 cut(s)	13, 23
PsiI	TTATAA	3 cut(s)	519, 605, 618
Psp6I	CCWGG	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	787
PspN4I	GGNNCC	3 cut(s)	562, 688, 994
PspPI	GGNCC	2 cut(s)	757, 920
PstNI	CAGNNNCTG	1 cut(s)	649
PsuI	RGATCY	4 cut(s)	365, 420, 560, 686
PvuII	CAGCTG	2 cut(s)	298, 937
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
RseI	CAYNNNNRTG	2 cut(s)	257, 978
SaqAI	TTAA	6 cut(s)	308, 338, 371, 473, 525, 669
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	6 cut(s)	261, 365, 374, 420, 560, 686
Sau96I	GGNCC	2 cut(s)	757, 920
SchI	GAGTC	2 cut(s)	14, 24
ScrFI	CCNGG	1 cut(s)	789
SinI	GGWCC	1 cut(s)	920
SmiMI	CAYNNNNRTG	2 cut(s)	257, 978
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SpeI	ACTAGT	1 cut(s)	734
Sse9I	AATT	8 cut(s)	181, 228, 475, 670, 695, 727, 835, 852
SseBI	AGGCCT	2 cut(s)	98, 291
SspMI	CTAG	3 cut(s)	573, 735, 749
StuI	AGGCCT	2 cut(s)	98, 291
StyD4I	CCNGG	1 cut(s)	787
TaaI	ACNGT	1 cut(s)	587
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	93, 209
TasI	AATT	8 cut(s)	181, 228, 475, 670, 695, 727, 835, 852
TfiI	GAWTC	1 cut(s)	912
Tru1I	TTAA	6 cut(s)	308, 338, 371, 473, 525, 669
Tru9I	TTAA	6 cut(s)	308, 338, 371, 473, 525, 669
TscAI	CASTG	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	554, 828
TspRI	CASTG	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	866
VpaK11BI	GGWCC	1 cut(s)	920
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	2 cut(s)	475, 852
XbaI	TCTAGA	1 cut(s)	748
XmnI	GAANNNNTTC	4 cut(s)	107, 283, 802, 911
XspI	CTAG	3 cut(s)	573, 735, 749
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.