Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0025424

Physical Location & Seq

Genomic Coordinates Forward (+)

15663939 .. 15665571

Gene Structure 1633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032475

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGAGCAGTGAGGAAGAAGAGCATTTCCCATCGTTAGAGAGCATCACTCCCCAGTCCAAAGTTGACTCTCTTCACCAATCCCACACCGAAAAGGGAATTAGAAAGCTATGTTGCGAGCTGCTAGATTTAAAGGATGCAGATTTGATGACTGGTGTATTCCATGAATTGGAAGGATGGAATCAATCTAGTAGTGATGTTCAGAAAAACTCTGAGGTTCATGAATTTCAAGATTCCTTGCCAACTGAAGCAGATGATCACAAGATATTTTTGGACAAAATTAATGTTCTCTTAGCTGAACATAAAGTGGAAGAAGCATTAGAGGCTTTAGATGCTGAGGAGAGAAACTCTCCCGATCTGAAGAGTTCACCAGATACTACATTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008104 GO:0008150 GO:0009856 GO:0009875 GO:0009987 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0031503 GO:0032501 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0034629 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051601 GO:0051640 GO:0051641 GO:0051704 GO:0060321 GO:0065003 GO:0070727 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo84_C

Protein Analysis

130

Amino Acids

14.61

Weight (kDa)

4.44

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025424)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000032475
rosa_multiflora	Rmu_sc0000344.1_g000020 Rmu_sc0001319.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	2 cut(s)	267, 380
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	230
AluBI	AGCT	3 cut(s)	109, 121, 296
AluI	AGCT	3 cut(s)	109, 121, 296
ApeKI	GCWGC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	68, 360
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	2 cut(s)	40, 171
BclI	TGATCA	1 cut(s)	256
BfaI	CTAG	2 cut(s)	125, 189
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	3 cut(s)	54, 127, 322
BmuI	ACTGGG	1 cut(s)	49
BplI	GAGNNNNNCTC	6 cut(s)	34, 66, 332, 364, 334, 366
Bpu10I	CCTNAGC	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	55, 157
BseGI	GGATG	2 cut(s)	142, 182
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	2 cut(s)	204, 327
BseNI	ACTGG	2 cut(s)	55, 157
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	256, 355
BspCNI	CTCAG	2 cut(s)	205, 328
BspHI	TCATGA	1 cut(s)	220
BspQI	GCTCTTC	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	55, 157
BssMI	GATC	2 cut(s)	256, 355
Bst6I	CTCTTC	3 cut(s)	15, 78, 356
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	213, 292, 336
BstF5I	GGATG	2 cut(s)	142, 182
BstKTI	GATC	2 cut(s)	259, 358
BstMBI	GATC	2 cut(s)	256, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 332
BstV1I	GCAGC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	142, 182
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	119
CciI	TCATGA	1 cut(s)	220
CviAII	CATG	2 cut(s)	164, 221
CviJI	RGCY	4 cut(s)	109, 121, 296, 326
CviKI_1	RGCY	4 cut(s)	109, 121, 296, 326
DdeI	CTNAG	3 cut(s)	213, 292, 336
DpnI	GATC	2 cut(s)	258, 357
DpnII	GATC	2 cut(s)	256, 355
DraI	TTTAAA	1 cut(s)	132
Eam1104I	CTCTTC	3 cut(s)	15, 78, 356
EarI	CTCTTC	3 cut(s)	15, 78, 356
Eco57I	CTGAAG	2 cut(s)	267, 380
FaeI	CATG	2 cut(s)	167, 224
FaiI	YATR	4 cut(s)	112, 165, 222, 303
FatI	CATG	2 cut(s)	163, 220
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	2 cut(s)	149, 189
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	2 cut(s)	125, 189
GluI	GCNGC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	167, 224
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	68, 181, 233
HphI	GGTGA	2 cut(s)	68, 360
Hpy166II	GTNNAC	2 cut(s)	67, 368
Hpy188I	TCNGA	3 cut(s)	204, 214, 360
Hpy188III	TCNNGA	3 cut(s)	221, 230, 353
Hpy8I	GTNNAC	2 cut(s)	67, 368
HpyAV	CCTTC	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 332
HpyF3I	CTNAG	3 cut(s)	213, 292, 336
Hsp92II	CATG	2 cut(s)	167, 224
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	256, 355
LguI	GCTCTTC	1 cut(s)	15
LpnPI	CCDG	3 cut(s)	68, 138, 384
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	3 cut(s)	54, 127, 322
MaeI	CTAG	2 cut(s)	125, 189
MalI	GATC	2 cut(s)	258, 357
MboI	GATC	2 cut(s)	256, 355
MboII	GAAGA	5 cut(s)	29, 32, 65, 323, 373
MluCI	AATT	4 cut(s)	99, 167, 224, 279
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	7, 208, 316, 331
MseI	TTAA	3 cut(s)	131, 282, 388
MwoI	GCNNNNNNNGC	2 cut(s)	323, 332
NdeII	GATC	2 cut(s)	256, 355
NlaIII	CATG	2 cut(s)	167, 224
PagI	TCATGA	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	181, 233
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PshBI	ATTAAT	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	131, 282, 388
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	2 cut(s)	256, 355
SchI	GAGTC	1 cut(s)	62
SetI	ASST	4 cut(s)	111, 123, 219, 298
SfaNI	GCATC	3 cut(s)	54, 127, 322
Sse9I	AATT	4 cut(s)	99, 167, 224, 279
SspMI	CTAG	2 cut(s)	125, 189
TasI	AATT	4 cut(s)	99, 167, 224, 279
TfiI	GAWTC	2 cut(s)	181, 233
Tru1I	TTAA	3 cut(s)	131, 282, 388
Tru9I	TTAA	3 cut(s)	131, 282, 388
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	180, 209, 237
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	169
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	1 cut(s)	224
XspI	CTAG	2 cut(s)	125, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.