Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001319.1

Orthogroup ID

OG0025424

Physical Location & Seq

Genomic Coordinates Forward (+)

21530 .. 23374

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001319.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggagagcagcgaagaagaagaggacttcccatcattagagagcatcactccccagtccaaagtcgactctctttaccaatcccacaccgaaaagggaattagaaagctatgttgcgagctcctagatttaaaggatgcagtggagaacttatgtggagatgtgcgaaccaaatacctggcttttctcaggatatctgaggaggctgttgaaatggagcatgaattggttgagctccgaaagcacatttcatctcaagggatacttgtgcaggatttgatgactggtgtattccgggaattggaaggatggaatcaatctagtagtgatgttcagaaaaattctgagattcatgaacttcaagatcccttgccaactgaagcagatgatcacaagatatttttggacaaaattgatgttctcttagctgaacataaagtggaagaagcgttagaggctttagatgctgaggagagaaacgaaataaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008104 GO:0008150 GO:0009856 GO:0009875 GO:0009987 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0031503 GO:0032501 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0034629 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051601 GO:0051640 GO:0051641 GO:0051704 GO:0060321 GO:0065003 GO:0070727 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo84_C

Protein Analysis

163

Amino Acids

18.68

Weight (kDa)

4.46

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025424)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000032475
rosa_multiflora	Rmu_sc0000344.1_g000020 Rmu_sc0001319.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	212, 362
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	109, 121, 235, 428
AluI	AGCT	4 cut(s)	109, 121, 235, 428
Alw21I	GWGCWC	2 cut(s)	123, 237
AlwI	GGATC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	123, 237
Bbv12I	GWGCWC	2 cut(s)	123, 237
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	2 cut(s)	40, 303
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	255
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	296
BfaI	CTAG	2 cut(s)	125, 321
BfuI	GTATCC	1 cut(s)	255
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	179, 296
BmrFI	CCNGG	2 cut(s)	179, 296
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	3 cut(s)	54, 127, 454
BmuI	ACTGGG	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
Bpu10I	CCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	55, 289
BseBI	CCWGG	1 cut(s)	179
BseGI	GGATG	2 cut(s)	142, 314
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	4 cut(s)	189, 202, 336, 459
BseNI	ACTGG	2 cut(s)	55, 289
BseRI	GAGGAG	2 cut(s)	215, 485
BseXI	GCAGC	1 cut(s)	21
BsgI	GTGCAG	1 cut(s)	290
BsiHKAI	GWGCWC	2 cut(s)	123, 237
BsiSI	CCGG	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	123, 237
Bsp143I	GATC	2 cut(s)	364, 388
BspCNI	CTCAG	4 cut(s)	190, 201, 337, 460
BspHI	TCATGA	1 cut(s)	352
BspPI	GGATC	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	55, 289
BssMI	GATC	2 cut(s)	364, 388
Bst2UI	CCWGG	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	5 cut(s)	188, 198, 345, 424, 468
BstF5I	GGATG	2 cut(s)	142, 314
BstKTI	GATC	2 cut(s)	367, 391
BstMBI	GATC	2 cut(s)	364, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 455, 464
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	177, 294
BstV1I	GCAGC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	142, 314
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	119
CciI	TCATGA	1 cut(s)	352
CviAII	CATG	2 cut(s)	221, 353
CviJI	RGCY	7 cut(s)	109, 121, 182, 206, 235, 428, 458
CviKI_1	RGCY	7 cut(s)	109, 121, 182, 206, 235, 428, 458
DdeI	CTNAG	5 cut(s)	188, 198, 345, 424, 468
DpnI	GATC	2 cut(s)	366, 390
DpnII	GATC	2 cut(s)	364, 388
DraI	TTTAAA	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	2 cut(s)	121, 235
Eco24I	GRGCYC	2 cut(s)	123, 237
Eco32I	GATATC	1 cut(s)	195
Eco53kI	GAGCTC	2 cut(s)	121, 235
Eco57I	CTGAAG	1 cut(s)	399
EcoICRI	GAGCTC	2 cut(s)	121, 235
EcoRII	CCWGG	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	195
EcoT38I	GRGCYC	2 cut(s)	123, 237
FaeI	CATG	2 cut(s)	224, 356
FaiI	YATR	5 cut(s)	112, 154, 222, 354, 435
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	2 cut(s)	220, 352
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	2 cut(s)	149, 321
FriOI	GRGCYC	2 cut(s)	123, 237
Fsp4HI	GCNGC	1 cut(s)	10
FspBI	CTAG	2 cut(s)	125, 321
GluI	GCNGC	1 cut(s)	10
HapII	CCGG	1 cut(s)	295
Hin1II	CATG	2 cut(s)	224, 356
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	68, 313, 349
HpaII	CCGG	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	4 cut(s)	199, 239, 336, 346
Hpy188III	TCNNGA	3 cut(s)	190, 353, 362
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	299
HpyCH4V	TGCA	2 cut(s)	140, 271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 455, 464
HpyF3I	CTNAG	5 cut(s)	188, 198, 345, 424, 468
Hsp92II	CATG	2 cut(s)	224, 356
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	364, 388
LmnI	GCTCC	3 cut(s)	126, 217, 240
LpnPI	CCDG	7 cut(s)	68, 164, 175, 191, 257, 270, 308
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	3 cut(s)	54, 127, 454
MaeI	CTAG	2 cut(s)	125, 321
MalI	GATC	2 cut(s)	366, 390
MboI	GATC	2 cut(s)	364, 388
MboII	GAAGA	4 cut(s)	26, 29, 32, 455
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	123, 237
MluCI	AATT	5 cut(s)	99, 224, 299, 340, 411
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	5 cut(s)	16, 193, 196, 448, 463
MseI	TTAA	1 cut(s)	131
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	2 cut(s)	179, 296
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	241, 455, 464
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	2 cut(s)	364, 388
NlaIII	CATG	2 cut(s)	224, 356
PagI	TCATGA	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	313, 349
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	2 cut(s)	123, 237
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	364
SacI	GAGCTC	2 cut(s)	123, 237
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	2 cut(s)	364, 388
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	179, 296
SduI	GDGCHC	2 cut(s)	123, 237
SetI	ASST	5 cut(s)	111, 123, 180, 237, 430
SfaNI	GCATC	3 cut(s)	54, 127, 454
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	5 cut(s)	99, 224, 299, 340, 411
SspMI	CTAG	2 cut(s)	125, 321
SstI	GAGCTC	2 cut(s)	123, 237
StyD4I	CCNGG	2 cut(s)	177, 294
TaqI	TCGA	1 cut(s)	66
TasI	AATT	5 cut(s)	99, 224, 299, 340, 411
TfiI	GAWTC	2 cut(s)	313, 349
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	9
TspDTI	ATGAA	4 cut(s)	237, 240, 341, 369
TspRI	CASTG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	2 cut(s)	125, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.