RLG00000032998

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0030978
Physical Location & Seq
Forward (+)
21917500 .. 21918156
657 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032998

Sequence Viewer

Length: 657 bp
ATGAGTAGTAAGAGTCGTCATCCGGGGCACTCCTTTGGGGTGCCATCATTCCAAGAACAAATCAGTCGTGATTTCAAGAAATTTGAGTCACATCCGGATGACAAAGACTCCGGCACATCGGCAGTTGCTGGCAAACCAGAAAAAGAGAAATCTGATGTTAATCTACTGATAGCGACACTTATAGCAACAGTTGCGTTCGCGGCCGGCCTCGCCCCGCCCGGAGGATATGGAGCCGACGGAAAGATAATTTTACAAGACAATACAAACTTCAAATGGTTTTTTACATTGAACGGGATCTCGTTCCTTCTCGCCCTCCTGGTACTTTTGTCTGAATCTTTTAAGGCACATTTTGCGGGCTCCAGACCCTTCAAAGTACTTAGTCCATTATTGTTCATTCTCAAACCTGGAACCATCATTATGGCTTCCCTTAACGGAATGCTTTGGGCATTTGTGACGGGCACAGCAGCAGGGCTAAACAAATCAAACAGCTCAATGAAATCGCCCTGGCCTGGTCCTCCGATATTAGCAGCTGGAATAGCTTTAATGATGTTTGGTTTGGTGGGTCCAGGTTTAGTTCAAGCCTGCTTGAAGACCAGGGATGCACTTCGTGAAAAAAGATCCGACTCCGGAGTCCGGAGCAGCGAGATTCCGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

219

Amino Acids

23.29

Weight (kDa)

9.64

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 47 - 155 9.7e-19 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030978)

Species Orthologous Gene IDs
rosa_laevigata RLG00000032998
rosa_multiflora Rmu_sc0006065.1_g000017

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 40
AccII CGCG 1 cut(s) 200
AccIII TCCGGA 3 cut(s) 94, 626, 633
AciI CCGC 3 cut(s) 200, 215, 353
AclWI GGATC 2 cut(s) 302, 612
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 608
AfaI GTAC 2 cut(s) 321, 375
AfiI CCNNNNNNNGG 3 cut(s) 221, 509, 633
AgsI TTSAA 6 cut(s) 76, 271, 289, 370, 578, 589
AjnI CCWGG 6 cut(s) 315, 403, 503, 508, 565, 593
AluBI AGCT 3 cut(s) 489, 530, 539
AluI AGCT 3 cut(s) 489, 530, 539
AlwI GGATC 2 cut(s) 302, 612
AlwNI CAGNNNCTG 1 cut(s) 128
Aor13HI TCCGGA 3 cut(s) 94, 626, 633
AoxI GGCC 3 cut(s) 201, 205, 506
ApeKI GCWGC 3 cut(s) 464, 527, 639
ApoI RAATTY 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 512, 563
AsuC2I CCSGG 2 cut(s) 24, 219
AvaII GGWCC 2 cut(s) 512, 563
BaeGI GKGCMC 2 cut(s) 30, 461
BaeI ACNNNNGTAYC 2 cut(s) 311, 344
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 596
BbvI GCAGC 3 cut(s) 476, 539, 651
BccI CCATC 2 cut(s) 52, 419
BciT130I CCWGG 6 cut(s) 317, 405, 505, 510, 567, 595
BcnI CCSGG 2 cut(s) 24, 219
BisI GCNGC 4 cut(s) 201, 465, 528, 640
BlsI GCNGC 4 cut(s) 202, 466, 529, 641
BmcAI AGTACT 1 cut(s) 375
Bme1390I CCNGG 8 cut(s) 24, 219, 317, 405, 505, 510, 567, 595
Bme18I GGWCC 2 cut(s) 512, 563
BmgT120I GGNCC 2 cut(s) 512, 563
BmiI GGNNCC 5 cut(s) 42, 232, 358, 409, 564
BmrFI CCNGG 8 cut(s) 24, 219, 317, 405, 505, 510, 567, 595
BmsI GCATC 1 cut(s) 589
BpiI GAAGAC 1 cut(s) 596
BpmI CTGGAG 1 cut(s) 343
BpuMI CCSGG 2 cut(s) 24, 219
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 4 cut(s) 23, 503, 594, 650
BsaWI WCCGGW 3 cut(s) 94, 626, 633
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 509, 633
Bse118I RCCGGY 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 159
BseAI TCCGGA 3 cut(s) 94, 626, 633
BseBI CCWGG 6 cut(s) 317, 405, 505, 510, 567, 595
BseDI CCNNGG 4 cut(s) 23, 503, 594, 650
BseGI GGATG 4 cut(s) 19, 91, 103, 604
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 221, 509, 633
BseSI GKGCMC 2 cut(s) 30, 461
BseX3I CGGCCG 1 cut(s) 201
BseXI GCAGC 3 cut(s) 476, 539, 651
Bsh1236I CGCG 1 cut(s) 200
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 3 cut(s) 203, 207, 508
BshNI GGYRCC 1 cut(s) 40
BsiEI CGRYCG 1 cut(s) 204
BsiSI CCGG 7 cut(s) 23, 95, 111, 204, 219, 627, 634
BslI CCNNNNNNNGG 3 cut(s) 221, 509, 633
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 3 cut(s) 203, 207, 508
Bsp1286I GDGCHC 3 cut(s) 30, 359, 461
Bsp13I TCCGGA 3 cut(s) 94, 626, 633
Bsp143I GATC 2 cut(s) 294, 617
BspACI CCGC 3 cut(s) 200, 215, 353
BspANI GGCC 3 cut(s) 203, 207, 508
BspEI TCCGGA 3 cut(s) 94, 626, 633
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 5 cut(s) 42, 232, 358, 409, 564
BspPI GGATC 2 cut(s) 302, 612
BspT107I GGYRCC 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 23, 503, 594, 650
BssMI GATC 2 cut(s) 294, 617
Bst2UI CCWGG 6 cut(s) 317, 405, 505, 510, 567, 595
Bst4CI ACNGT 1 cut(s) 190
BstAPI GCANNNNNTGC 2 cut(s) 191, 350
BstC8I GCNNGC 4 cut(s) 130, 205, 355, 583
BstDEI CTNAG 1 cut(s) 377
BstDSI CCRYGG 1 cut(s) 650
BstF5I GGATG 4 cut(s) 19, 91, 103, 604
BstFNI CGCG 1 cut(s) 200
BstKTI GATC 2 cut(s) 297, 620
BstMBI GATC 2 cut(s) 294, 617
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 5 cut(s) 191, 200, 209, 350, 536
BstNI CCWGG 6 cut(s) 317, 405, 505, 510, 567, 595
BstSCI CCNGG 8 cut(s) 22, 217, 315, 403, 503, 508, 565, 593
BstSLI GKGCMC 2 cut(s) 30, 461
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 476, 539, 651
BstV2I GAAGAC 1 cut(s) 596
BstX2I RGATCY 2 cut(s) 294, 617
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 2 cut(s) 294, 617
BstZI CGGCCG 1 cut(s) 201
BsuRI GGCC 3 cut(s) 203, 207, 508
BtgI CCRYGG 1 cut(s) 650
BtsCI GGATG 4 cut(s) 19, 91, 103, 604
Cac8I GCNNGC 4 cut(s) 130, 205, 355, 583
CaiI CAGNNNCTG 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 512, 563
Csp6I GTAC 2 cut(s) 320, 374
CviQI GTAC 2 cut(s) 320, 374
DdeI CTNAG 1 cut(s) 377
DpnI GATC 2 cut(s) 296, 619
DpnII GATC 2 cut(s) 294, 617
DraIII CACNNNGTG 1 cut(s) 608
DrdI GACNNNNNNGTC 1 cut(s) 629
DseDI GACNNNNNNGTC 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 201
EagI CGGCCG 1 cut(s) 201
EclXI CGGCCG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 2 cut(s) 512, 563
Eco52I CGGCCG 1 cut(s) 201
EcoRII CCWGG 6 cut(s) 315, 403, 503, 508, 565, 593
EcoT38I GRGCYC 1 cut(s) 359
FaiI YATR 3 cut(s) 182, 228, 419
FauI CCCGC 2 cut(s) 222, 346
Fnu4HI GCNGC 4 cut(s) 201, 465, 528, 640
FokI GGATG 4 cut(s) 6, 78, 110, 611
FriOI GRGCYC 1 cut(s) 359
FseI GGCCGGCC 1 cut(s) 207
Fsp4HI GCNGC 4 cut(s) 201, 465, 528, 640
GluI GCNGC 4 cut(s) 201, 465, 528, 640
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 3 cut(s) 203, 207, 508
HapII CCGG 7 cut(s) 23, 95, 111, 204, 219, 627, 634
HinfI GANTC 7 cut(s) 13, 86, 107, 332, 623, 630, 646
HpaII CCGG 7 cut(s) 23, 95, 111, 204, 219, 627, 634
Hpy188I TCNGA 4 cut(s) 154, 331, 519, 622
Hpy188III TCNNGA 7 cut(s) 68, 76, 95, 360, 608, 627, 634
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 314, 376
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 602
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 200, 209, 350, 536
HpyF3I CTNAG 1 cut(s) 377
Kpn2I TCCGGA 3 cut(s) 94, 626, 633
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 294, 617
LmnI GCTCC 3 cut(s) 230, 362, 636
Lsp1109I GCAGC 3 cut(s) 476, 539, 651
LweI GCATC 1 cut(s) 589
MaeIII GTNAC 2 cut(s) 87, 451
MalI GATC 2 cut(s) 296, 619
MboI GATC 2 cut(s) 294, 617
MboII GAAGA 1 cut(s) 601
MflI RGATCY 2 cut(s) 294, 617
MhlI GDGCHC 3 cut(s) 30, 359, 461
MluCI AATT 2 cut(s) 80, 246
MlyI GAGTC 5 cut(s) 22, 95, 101, 617, 639
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 4 cut(s) 215, 218, 323, 525
MroI TCCGGA 3 cut(s) 94, 626, 633
MroNI GCCGGC 1 cut(s) 203
MseI TTAA 4 cut(s) 159, 339, 429, 542
MslI CAYNNNNRTG 2 cut(s) 96, 416
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 7 cut(s) 23, 95, 111, 204, 219, 627, 634
MspR9I CCNGG 8 cut(s) 24, 219, 317, 405, 505, 510, 567, 595
Mva1269I GAATGC 1 cut(s) 441
MvaI CCWGG 6 cut(s) 317, 405, 505, 510, 567, 595
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 5 cut(s) 191, 200, 209, 350, 536
NaeI GCCGGC 1 cut(s) 205
NciI CCSGG 2 cut(s) 24, 219
NdeII GATC 2 cut(s) 294, 617
NgoMIV GCCGGC 1 cut(s) 203
NlaIV GGNNCC 5 cut(s) 42, 232, 358, 409, 564
NmuCI GTSAC 2 cut(s) 87, 451
PctI GAATGC 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 332, 646
PkrI GCNGC 4 cut(s) 202, 466, 529, 641
PleI GAGTC 5 cut(s) 21, 94, 101, 617, 638
PpsI GAGTC 5 cut(s) 21, 94, 101, 617, 638
Psp6I CCWGG 6 cut(s) 315, 403, 503, 508, 565, 593
PspGI CCWGG 6 cut(s) 315, 403, 503, 508, 565, 593
PspN4I GGNNCC 5 cut(s) 42, 232, 358, 409, 564
PspPI GGNCC 2 cut(s) 512, 563
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 2 cut(s) 294, 617
PvuII CAGCTG 1 cut(s) 530
RigI GGCCGGCC 1 cut(s) 207
RsaI GTAC 2 cut(s) 321, 375
RsaNI GTAC 2 cut(s) 320, 374
RseI CAYNNNNRTG 2 cut(s) 96, 416
SaqAI TTAA 4 cut(s) 159, 339, 429, 542
SatI GCNGC 4 cut(s) 201, 465, 528, 640
Sau3AI GATC 2 cut(s) 294, 617
Sau96I GGNCC 2 cut(s) 512, 563
ScaI AGTACT 1 cut(s) 375
SchI GAGTC 5 cut(s) 22, 95, 101, 617, 639
ScrFI CCNGG 8 cut(s) 24, 219, 317, 405, 505, 510, 567, 595
SduI GDGCHC 3 cut(s) 30, 359, 461
SetI ASST 5 cut(s) 406, 491, 532, 541, 571
SfaNI GCATC 1 cut(s) 589
SinI GGWCC 2 cut(s) 512, 563
SmiMI CAYNNNNRTG 2 cut(s) 96, 416
Sse9I AATT 2 cut(s) 80, 246
SsiI CCGC 3 cut(s) 200, 215, 353
StyD4I CCNGG 8 cut(s) 22, 217, 315, 403, 503, 508, 565, 593
TaaI ACNGT 1 cut(s) 190
TasI AATT 2 cut(s) 80, 246
TatI WGTACW 1 cut(s) 373
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 2 cut(s) 332, 646
Tru1I TTAA 4 cut(s) 159, 339, 429, 542
Tru9I TTAA 4 cut(s) 159, 339, 429, 542
TseFI GTSAC 2 cut(s) 87, 451
TseI GCWGC 3 cut(s) 464, 527, 639
Tsp45I GTSAC 2 cut(s) 87, 451
TspDTI ATGAA 2 cut(s) 382, 509
TspGWI ACGGA 3 cut(s) 252, 447, 639
VpaK11BI GGWCC 2 cut(s) 512, 563
XapI RAATTY 1 cut(s) 80
ZrmI AGTACT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.