Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0020139

Physical Location & Seq

Genomic Coordinates Forward (+)

29813003 .. 29817322

Gene Structure 4320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033635

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAGGAGAAAATGGAGAAAACCAAAATACGTATGGATCTTCATCTGAATTTTGATCGGAAATTCAGAATCAGTGGAGAAGATGATACGAGCAGTGATGGTGATAAAATACTCAGGGCAAGCCTCGCCTTGCCAAGTTTTACGAATTTCAGGCTCTTGGAGCCAATCAGGGAGCAGTTCCCTATTCTCTCTTATGCTAACTTCTACCAGTTTGCTGGAGTTGTTGCTGTTGAGGTCACTGGTGGACCTAATGTTCCATTCCATTCAGGAAGAGAGGTGAAGTATTCGCAAGAGCCGGACAACAATTCCAAGTCTTGCAAAGCCAGAGGCAGTGATCTCCGCGTTGATTTTAAGGTTGGAGATTGTGGATTATCAAGAATCAATCACAATACTTTGGTATCTGGTGATGTGCGAGGAAAGCTTCCATGGATGACACCAGAATTGTTGAACGGTAGCAATAGCCGGGTCGCTGAGATTGTTGCTAACTTCATTGTGAAGGGTCTGGTATTCCAGCAAGGTCGTAGTTCAGGCATATCGTCAGGCAATTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0012505 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0022414 GO:0030054 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0061458 GO:0070887 GO:0071944 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

185

Amino Acids

20.51

Weight (kDa)

8.88

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	49 - 99	3.1e-06	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0020139)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000033635
rosa_samantha	Rh3CG357200 Rh5BG482400 Rh5CG507000 Rh6AG140500 Rh6CG295800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	342
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	3 cut(s)	49, 62, 145
AgsI	TTSAA	1 cut(s)	448
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
AlwI	GGATC	1 cut(s)	45
ApoI	RAATTY	3 cut(s)	49, 62, 145
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	3 cut(s)	113, 289, 416
AvaII	GGWCC	1 cut(s)	245
BaeI	ACNNNNGTAYC	2 cut(s)	381, 414
BccI	CCATC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	464
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	464
BsaAI	YACGTR	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	208, 244
Bse8I	GATNNNNATC	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	435
BseJI	GATNNNNATC	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	127, 462
BseNI	ACTGG	2 cut(s)	208, 244
BseRI	GAGGAG	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	296, 463
Bsp143I	GATC	3 cut(s)	37, 55, 334
Bsp19I	CCATGG	1 cut(s)	425
BspACI	CCGC	1 cut(s)	340
BspCNI	CTCAG	2 cut(s)	126, 463
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	208, 244
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	3 cut(s)	37, 55, 334
BssT1I	CCWWGG	1 cut(s)	425
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	113, 471
BstDSI	CCRYGG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	435
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	3 cut(s)	40, 58, 337
BstMBI	GATC	3 cut(s)	37, 55, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 160, 418
BstSCI	CCNGG	1 cut(s)	462
BstSNI	TACGTA	1 cut(s)	32
BstUI	CGCG	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	435
BtsI	GCAGTG	2 cut(s)	100, 337
BtsIMutI	CAGTG	4 cut(s)	79, 100, 237, 337
Cac8I	GCNNGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	245
CviAII	CATG	1 cut(s)	426
CviJI	RGCY	7 cut(s)	123, 154, 163, 295, 323, 421, 462
CviKI_1	RGCY	7 cut(s)	123, 154, 163, 295, 323, 421, 462
DdeI	CTNAG	2 cut(s)	113, 471
DpnI	GATC	3 cut(s)	39, 57, 336
DpnII	GATC	3 cut(s)	37, 55, 334
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco105I	TACGTA	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	1 cut(s)	429
FaiI	YATR	4 cut(s)	35, 195, 427, 533
FatI	CATG	1 cut(s)	425
FokI	GGATG	1 cut(s)	442
GsuI	CTGGAG	1 cut(s)	237
HapII	CCGG	2 cut(s)	296, 463
Hin1II	CATG	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	2 cut(s)	69, 378
HpaII	CCGG	2 cut(s)	296, 463
HphI	GGTGA	3 cut(s)	113, 289, 416
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	48, 60, 68
Hpy188III	TCNNGA	2 cut(s)	267, 375
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 160, 418
HpyF3I	CTNAG	2 cut(s)	113, 471
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	37, 55, 334
LmnI	GCTCC	2 cut(s)	160, 172
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	39, 57, 336
MboI	GATC	3 cut(s)	37, 55, 334
MboII	GAAGA	3 cut(s)	32, 92, 282
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	6 cut(s)	49, 62, 145, 304, 440, 544
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	5 cut(s)	134, 226, 268, 320, 407
MseI	TTAA	1 cut(s)	351
MspI	CCGG	2 cut(s)	296, 463
MspR9I	CCNGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	125, 160, 418
NciI	CCSGG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	425
NdeII	GATC	3 cut(s)	37, 55, 334
NlaIII	CATG	1 cut(s)	429
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	69, 378
Ppu21I	YACGTR	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	351
Sau3AI	GATC	3 cut(s)	37, 55, 334
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	7 cut(s)	34, 237, 250, 279, 357, 423, 520
SinI	GGWCC	1 cut(s)	245
SnaBI	TACGTA	1 cut(s)	32
Sse9I	AATT	6 cut(s)	49, 62, 145, 304, 440, 544
SsiI	CCGC	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	1 cut(s)	34
TasI	AATT	6 cut(s)	49, 62, 145, 304, 440, 544
TfiI	GAWTC	2 cut(s)	69, 378
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	4 cut(s)	79, 100, 244, 337
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	32, 478
TspRI	CASTG	4 cut(s)	79, 100, 244, 337
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	3 cut(s)	49, 62, 145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.