Rh5BG482400

protein tyrosine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0020139
Physical Location & Seq
Forward (+)
76865380 .. 76876602
11223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG482400.1

Sequence Viewer

Length: 234 bp
ATGCTGGAGGGTATGAGACCCAAGCCGGCATGGTTCTCCAACACAGTTGGAGATTGTGGATTATCAAGAATCAATCACAATACTTTGGTATCTGGTGATGTGCGGGGAAAGCTTCCATGGATGACACCAGAATTGTTGAACGGTAGCAATAGCCGGGTTTTTGAAGAAGTCTGTTTACTGGAAGATCTTGAGAAGTATAGAGTTTCTAGTTTTAAGGCTGTTTTTAATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

77

Amino Acids

8.69

Weight (kDa)

6.55

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020139)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033635
rosa_samantha Rh3CG357200 Rh5BG482400 Rh5CG507000 Rh6AG140500 Rh6CG295800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 103
AgsI TTSAA 2 cut(s) 139, 164
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 10
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 107
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 1 cut(s) 207
BglII AGATCT 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 116
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 183
BsiSI CCGG 2 cut(s) 26, 154
BsmAI GTCTC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 116
BspACI CCGC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 46, 143
BstC8I GCNNGC 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 25
CviAII CATG 2 cut(s) 30, 117
CviJI RGCY 4 cut(s) 25, 112, 153, 218
CviKI_1 RGCY 4 cut(s) 25, 112, 153, 218
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 33, 120
FaiI YATR 4 cut(s) 14, 31, 118, 198
FatI CATG 2 cut(s) 29, 116
FauI CCCGC 1 cut(s) 96
FokI GGATG 1 cut(s) 133
FspBI CTAG 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 26
HapII CCGG 2 cut(s) 26, 154
Hin1II CATG 2 cut(s) 33, 120
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 69
HpaII CCGG 2 cut(s) 26, 154
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 66, 188
Hpy8I GTNNAC 1 cut(s) 176
HpyCH4III ACNGT 2 cut(s) 46, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
Hsp92II CATG 2 cut(s) 33, 120
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 5 cut(s) 39, 78, 141, 164, 167
MaeI CTAG 1 cut(s) 207
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 2 cut(s) 176, 194
MflI RGATCY 1 cut(s) 184
MluCI AATT 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 28, 63
MroNI GCCGGC 1 cut(s) 25
MseI TTAA 2 cut(s) 213, 225
MspI CCGG 2 cut(s) 26, 154
MspR9I CCNGG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 109
NaeI GCCGGC 1 cut(s) 27
NciI CCSGG 1 cut(s) 155
NcoI CCATGG 1 cut(s) 116
NdeII GATC 1 cut(s) 184
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 2 cut(s) 33, 120
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 184
SaqAI TTAA 2 cut(s) 213, 225
Sau3AI GATC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 155
SetI ASST 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 131
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 46, 143
TasI AATT 1 cut(s) 131
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 2 cut(s) 213, 225
Tru9I TTAA 2 cut(s) 213, 225
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.