Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0024893

Physical Location & Seq

Genomic Coordinates Reverse (-)

34023614 .. 34028009

Gene Structure 4396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033909

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGTCAGTTGGGTGGACGCACTTTATTTCTTTCTTTGACTAAGGTGATCGAATCGCTTGCTTCCCTTCTTCTTCGTCTTCTACTTCCCACAAGCAAACCCAGAAGACCTAACAGCCAGCAGAATTGGGAGGCAATGGATAGCAGTTTGGGTGAGGGACTGATTGGAGAGGATCCCATGGAAATCCAACGATGGAGGAAATTACGTGGCTTGCTCAAGGACCCGAAGAGAAGATTTCGCTTCACTGCCAACCTCCCTAAGCGAGCAGAAGCAGCAGCTATTCGCCGTACCAACCAGGAGAAGTTCAGAGAGGCAGTTTTGGTTTCACAAGCTGCATTGCAGTTTATCCAAGGCTCGGGCGGTGGTTCACGTGAAATTGTGTATCGGAGAGGCCCGGGATGCAAACCTAAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019866 GO:0022803 GO:0022804 GO:0022838 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

140

Amino Acids

15.59

Weight (kDa)

11.25

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	63 - 90	5.8e-09	Ca2+-ATPase N terminal autoinhibitory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024893)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0107921
rosa_laevigata	RLG00000033909
rosa_samantha	Rh2AG198100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	2 cut(s)	167, 180
AcvI	CACGTG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	2 cut(s)	278, 332
AluI	AGCT	2 cut(s)	278, 332
AlwI	GGATC	2 cut(s)	167, 180
Ama87I	CYCGRG	2 cut(s)	355, 394
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	3 cut(s)	272, 275, 332
AspS9I	GGNCC	2 cut(s)	220, 392
AsuC2I	CCSGG	2 cut(s)	395, 396
AsuHPI	GGTGA	2 cut(s)	58, 164
AvaI	CYCGRG	2 cut(s)	355, 394
AvaII	GGWCC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	172
BbrPI	CACGTG	1 cut(s)	371
BbsI	GAAGAC	2 cut(s)	71, 112
BbvI	GCAGC	3 cut(s)	284, 287, 319
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	270
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	296
BcnI	CCSGG	2 cut(s)	395, 396
BisI	GCNGC	3 cut(s)	273, 276, 333
BlsI	GCNGC	3 cut(s)	274, 277, 334
Bme1390I	CCNGG	3 cut(s)	296, 395, 396
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	2 cut(s)	355, 394
BmgT120I	GGNCC	2 cut(s)	220, 392
BmiI	GGNNCC	2 cut(s)	174, 222
BmrFI	CCNGG	3 cut(s)	296, 395, 396
BmsI	GCATC	1 cut(s)	389
BpiI	GAAGAC	2 cut(s)	71, 112
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	2 cut(s)	395, 396
BsaAI	YACGTR	2 cut(s)	206, 371
BsaJI	CCNNGG	3 cut(s)	177, 349, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse3DI	GCAATG	2 cut(s)	141, 335
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	3 cut(s)	177, 349, 394
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	2 cut(s)	141, 335
BseXI	GCAGC	3 cut(s)	284, 287, 319
BshFI	GGCC	1 cut(s)	393
BsiHKCI	CYCGRG	2 cut(s)	355, 394
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	393
BsoBI	CYCGRG	2 cut(s)	355, 394
Bsp143I	GATC	2 cut(s)	48, 172
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	174, 222
BspPI	GGATC	2 cut(s)	167, 180
BsrDI	GCAATG	2 cut(s)	141, 335
BssECI	CCNNGG	3 cut(s)	177, 349, 394
BssMI	GATC	2 cut(s)	48, 172
BssT1I	CCWWGG	2 cut(s)	177, 349
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	221
BstBAI	YACGTR	2 cut(s)	206, 371
BstC8I	GCNNGC	4 cut(s)	60, 119, 212, 264
BstDEI	CTNAG	2 cut(s)	42, 258
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	2 cut(s)	51, 175
BstMBI	GATC	2 cut(s)	48, 172
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 399
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	3 cut(s)	294, 393, 394
BstV1I	GCAGC	3 cut(s)	284, 287, 319
BstV2I	GAAGAC	2 cut(s)	71, 112
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	404
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	4 cut(s)	60, 119, 212, 264
Cfr13I	GGNCC	2 cut(s)	220, 392
Cfr9I	CCCGGG	1 cut(s)	394
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	6 cut(s)	117, 210, 278, 332, 354, 393
CviKI_1	RGCY	6 cut(s)	117, 210, 278, 332, 354, 393
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	42, 258
DpnI	GATC	2 cut(s)	50, 174
DpnII	GATC	2 cut(s)	48, 172
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	177, 349
Eco47I	GGWCC	1 cut(s)	220
Eco72I	CACGTG	1 cut(s)	371
Eco88I	CYCGRG	2 cut(s)	355, 394
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	2 cut(s)	177, 349
ErhI	CCWWGG	2 cut(s)	177, 349
FaeI	CATG	1 cut(s)	181
FaiI	YATR	1 cut(s)	179
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	273, 276, 333
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	3 cut(s)	273, 276, 333
GluI	GCNGC	3 cut(s)	273, 276, 333
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	2 cut(s)	58, 164
Hpy166II	GTNNAC	2 cut(s)	17, 368
Hpy188I	TCNGA	2 cut(s)	308, 387
Hpy188III	TCNNGA	1 cut(s)	417
Hpy8I	GTNNAC	2 cut(s)	17, 368
HpyAV	CCTTC	1 cut(s)	77
HpyCH4IV	ACGT	2 cut(s)	205, 370
HpyCH4V	TGCA	3 cut(s)	335, 340, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 399
HpyF3I	CTNAG	2 cut(s)	42, 258
HpySE526I	ACGT	2 cut(s)	205, 370
Hsp92II	CATG	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	48, 172
LpnPI	CCDG	5 cut(s)	115, 131, 281, 308, 408
Lsp1109I	GCAGC	3 cut(s)	284, 287, 319
LweI	GCATC	1 cut(s)	389
MaeII	ACGT	2 cut(s)	205, 370
MalI	GATC	2 cut(s)	50, 174
MboI	GATC	2 cut(s)	48, 172
MboII	GAAGA	7 cut(s)	62, 65, 71, 117, 238, 243, 405
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	3 cut(s)	124, 200, 375
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	7 cut(s)	124, 148, 163, 189, 263, 304, 383
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	3 cut(s)	296, 395, 396
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	272, 399
NciI	CCSGG	2 cut(s)	395, 396
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	48, 172
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	174, 222
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	274, 277, 334
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
Ppu21I	YACGTR	2 cut(s)	206, 371
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	294
PspCI	CACGTG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	174, 222
PspPI	GGNCC	2 cut(s)	220, 392
PspPPI	RGGWCCY	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SatI	GCNGC	3 cut(s)	273, 276, 333
Sau3AI	GATC	2 cut(s)	48, 172
Sau96I	GGNCC	2 cut(s)	220, 392
ScrFI	CCNGG	3 cut(s)	296, 395, 396
SetI	ASST	8 cut(s)	48, 112, 208, 255, 280, 334, 373, 409
SfaNI	GCATC	1 cut(s)	389
SinI	GGWCC	1 cut(s)	220
SmaI	CCCGGG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	124, 200, 375
SsiI	CCGC	1 cut(s)	360
StyD4I	CCNGG	3 cut(s)	294, 393, 394
StyI	CCWWGG	2 cut(s)	177, 349
TaiI	ACGT	2 cut(s)	208, 373
TaqI	TCGA	1 cut(s)	51
TasI	AATT	3 cut(s)	124, 200, 375
TfiI	GAWTC	1 cut(s)	53
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	3 cut(s)	272, 275, 332
TspMI	CCCGGG	1 cut(s)	394
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	220
XmaI	CCCGGG	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.