Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0024893

Physical Location & Seq

Genomic Coordinates Reverse (-)

20015286 .. 20016272

Gene Structure 987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG198100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAGAGTTATTTGCAAGAGAACTTTGGGGAAGTGAAGGCTAAGGGCTCGTCTGAAGAAACGTTGCAGAAATGGAGGAAGCTCTGTGGAGTTGTCAAGAACCCGAAAAGAAGGTTTCGGTTCACTGCTAATCTTTCCAAGCGTATAGAGGCTGCGGCTATGCGCCGTACCAATCAGGAGAAATTGAGGATTGCAGTTTTGGTTTCTAAAGCTGCATTTCAATTTATTCAAGGTGAGTCTCTTCAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

83

Amino Acids

9.63

Weight (kDa)

10.53

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	5 - 49	1e-22	Ca2+-ATPase N terminal autoinhibitory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0024893)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0107921
rosa_laevigata	RLG00000033909
rosa_samantha	Rh2AG198100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AclI	AACGTT	1 cut(s)	62
AcuI	CTGAAG	2 cut(s)	75, 227
AfaI	GTAC	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	221, 230
AluBI	AGCT	2 cut(s)	82, 212
AluI	AGCT	2 cut(s)	82, 212
Alw26I	GTCTC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	152, 212
AspLEI	GCGC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	139, 199
BceAI	ACGGC	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	243
BisI	GCNGC	3 cut(s)	153, 156, 213
BlsI	GCNGC	3 cut(s)	154, 157, 214
Bpu10I	CCTNAGC	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	139, 199
BsmAI	GTCTC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	139, 199
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
CfoI	GCGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	168
CviJI	RGCY	6 cut(s)	41, 48, 82, 152, 158, 212
CviKI_1	RGCY	6 cut(s)	41, 48, 82, 152, 158, 212
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	75, 227
EcoT38I	GRGCYC	1 cut(s)	50
FaiI	YATR	2 cut(s)	146, 161
Fnu4HI	GCNGC	3 cut(s)	153, 156, 213
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	3 cut(s)	153, 156, 213
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	3 cut(s)	153, 156, 213
HhaI	GCGC	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	236
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	97, 176
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	2 cut(s)	31, 105
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	4 cut(s)	16, 67, 194, 215
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	62
HspAI	GCGC	1 cut(s)	163
LpnPI	CCDG	1 cut(s)	161
Lsp1109I	GCAGC	2 cut(s)	139, 199
MaeII	ACGT	1 cut(s)	62
MboII	GAAGA	2 cut(s)	68, 233
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	2 cut(s)	182, 221
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	3 cut(s)	69, 142, 180
MseI	TTAA	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	154, 157, 214
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp1406I	AACGTT	1 cut(s)	62
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	250
SatI	GCNGC	3 cut(s)	153, 156, 213
SchI	GAGTC	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	5 cut(s)	65, 84, 116, 214, 235
SgeI	CNNG	7 cut(s)	29, 61, 109, 115, 151, 188, 242
Sse9I	AATT	2 cut(s)	182, 221
SsiI	CCGC	1 cut(s)	155
TaiI	ACGT	1 cut(s)	65
TasI	AATT	2 cut(s)	182, 221
TauI	GCSGC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	250
Tru9I	TTAA	1 cut(s)	250
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	2 cut(s)	152, 212
TspRI	CASTG	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.