Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0025417

Physical Location & Seq

Genomic Coordinates Reverse (-)

35801535 .. 35803226

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034046

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTTATAGTAGGGGAGTTTGTAGGAGGTGCTGCTCTTGGAGCAGCATTTGGGGTATTGTTTGATGTTGTGAATGAAGCAGTTGACAACCCTACTGCCTTGAAATCCCTCCTTGAGAATATCAAATTTTCGCTACACTTTCTAAAACCAGTGATTGAAAAGATAGGAGAGCTAATGTGTGGATGGGTCTCTCAAAAGACTGATACAAATACTGAGGGTACAAGGAGTAGGGATGCAAAGGAGACCTTGATTTTGTCAAGAGAAAACCATGACAAACTTATTGAATTGGCAAGAAATACAAAGGAGACCTTGGTTTTGGCACAAAGCAATACTATCCAGCTTATTGAATCAGCAAAGGATGGGAAGGAGACCTTAGTTTTGGCAAGACAAAATGCTGACCAACTGATTGAATCATCAAGACATGGGAAGGAGACCTCGGAGTTGGCAAAACAAAATAATGACCAGCTTGTTGAATCTGCAAGAGATGTGAATGACCCCTTGGTTTTGACCAAGAAAATTAAAAGGTTGCTCAAACGAATTGAACGTCTGGTGCCTTGTAATTGCAAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

191

Amino Acids

21.02

Weight (kDa)

6.85

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 59	1.8e-08	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025417)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034046
rosa_multiflora	Rmu_sc0003005.1_g000023 Rmu_sc0032032.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	550
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	220
AgsI	TTSAA	7 cut(s)	103, 158, 284, 347, 410, 473, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	172, 340, 466
AluI	AGCT	3 cut(s)	172, 340, 466
Alw26I	GTCTC	5 cut(s)	193, 236, 299, 362, 425
ApeKI	GCWGC	2 cut(s)	32, 44
ApoI	RAATTY	1 cut(s)	125
ArsI	GACNNNNNNTTYG	8 cut(s)	235, 267, 298, 330, 361, 393, 529, 561
BanI	GGYRCC	1 cut(s)	550
BbvI	GCAGC	2 cut(s)	19, 56
BccI	CCATC	2 cut(s)	177, 353
BcoDI	GTCTC	5 cut(s)	193, 236, 299, 362, 425
BisI	GCNGC	2 cut(s)	33, 45
BlsI	GCNGC	2 cut(s)	34, 46
BmiI	GGNNCC	1 cut(s)	552
BmsI	GCATC	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	134
BsaI	GGTCTC	5 cut(s)	193, 236, 299, 362, 425
BsaJI	CCNNGG	3 cut(s)	309, 435, 498
Bse1I	ACTGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	309, 435, 498
BseGI	GGATG	3 cut(s)	188, 238, 364
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	19, 56
BshNI	GGYRCC	1 cut(s)	550
BsmAI	GTCTC	5 cut(s)	193, 236, 299, 362, 425
Bso31I	GGTCTC	5 cut(s)	193, 236, 299, 362, 425
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	550
BspTNI	GGTCTC	5 cut(s)	193, 236, 299, 362, 425
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	309, 435, 498
BssT1I	CCWWGG	2 cut(s)	309, 498
BstDEI	CTNAG	2 cut(s)	213, 373
BstF5I	GGATG	3 cut(s)	188, 238, 364
BstMAI	GTCTC	5 cut(s)	193, 236, 299, 362, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	19, 56
BtsCI	GGATG	3 cut(s)	188, 238, 364
BtsIMutI	CAGTG	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	2 cut(s)	269, 422
CviJI	RGCY	3 cut(s)	172, 340, 466
CviKI_1	RGCY	3 cut(s)	172, 340, 466
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	2 cut(s)	213, 373
Eco130I	CCWWGG	2 cut(s)	309, 498
Eco31I	GGTCTC	5 cut(s)	193, 236, 299, 362, 425
EcoT14I	CCWWGG	2 cut(s)	309, 498
ErhI	CCWWGG	2 cut(s)	309, 498
FaeI	CATG	2 cut(s)	272, 425
FaiI	YATR	3 cut(s)	8, 270, 423
FalI	AAGNNNNNCTT	6 cut(s)	230, 262, 293, 325, 356, 388
FatI	CATG	2 cut(s)	268, 421
Fnu4HI	GCNGC	2 cut(s)	33, 45
FokI	GGATG	3 cut(s)	195, 245, 371
Fsp4HI	GCNGC	2 cut(s)	33, 45
GluI	GCNGC	2 cut(s)	33, 45
Hin1II	CATG	2 cut(s)	272, 425
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	347, 410, 473
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	2 cut(s)	258, 417
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	358, 421
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	3 cut(s)	236, 479, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	213, 373
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	2 cut(s)	272, 425
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	4 cut(s)	162, 350, 476, 533
Lsp1109I	GCAGC	2 cut(s)	19, 56
LweI	GCATC	1 cut(s)	223
MaeII	ACGT	1 cut(s)	544
MluCI	AATT	5 cut(s)	125, 284, 516, 537, 559
MnlI	CCTC	4 cut(s)	20, 119, 208, 445
MseI	TTAA	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	272, 425
NlaIV	GGNNCC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	541
PfeI	GAWTC	3 cut(s)	347, 410, 473
PkrI	GCNGC	2 cut(s)	34, 46
PspN4I	GGNNCC	1 cut(s)	552
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	2 cut(s)	33, 45
SfaNI	GCATC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	5 cut(s)	125, 284, 516, 537, 559
StyI	CCWWGG	2 cut(s)	309, 498
TaiI	ACGT	1 cut(s)	547
TasI	AATT	5 cut(s)	125, 284, 516, 537, 559
TfiI	GAWTC	3 cut(s)	347, 410, 473
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	2 cut(s)	32, 44
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.