Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0030920

Physical Location & Seq

Genomic Coordinates Forward (+)

38459492 .. 38461301

Gene Structure 1810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034210

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCAATCACCTACTCGACTTCTTGATTCTTTTAACTATCATCCTGTTGAGGATTTTGATTGTGTTGGTAGAGTTGAAGGTTACTTAGTCCCTCCAAAAACAGAGTCATCTCTCCCAGCATCTTGTAAATATCAGCCTGTTGAGGATTTCTATCGTTTTGGTGGAGTTGAATGGCATGCATTTTCCTCTTCTGGACTGAATAGTCCTCTAAAGTTGATAGATGATCATGCCGGATTGCTGGCTCATCAAGATTCATCAAGAGCATCACCTTCTGTGGGCTCTTATGACTCTGGTAGAAGAACTCCTGTCAGCTATGATGATGTTCAAGTCCTGCAACAAATTAGGCCTTCTACACCTGCAACTGCTTCTCTTGATGTGTACGTGTATATAATCAATGGAGTATCCTACCAAGTAAACAAACTTGTTGACATGACAAAATCAAGAGGGATAATCAAGGATGTTTTAGTATTTGGTTACTGTGGGAACGTGGGAATTTGCAGTTATAATGATTCCAATCCCATATGTGGCTGCCCTTCTCTTAAGTTTGAGCCAGGTAATCCCAAAGATAGCAGGCAAGGGTGTAACAGGAAAATGGAGATTGAGGACTGTCCTCAGAGTGTGACTGTTAGATTTGGATCATACTCCCTTCTTGACATACCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

222

Amino Acids

24.34

Weight (kDa)

5.34

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0030920)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034210
rosa_multiflora	Rmu_co8446963.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AarI	CACCTGC	1 cut(s)	364
AasI	GACNNNNNNGTC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	364
AclWI	GGATC	1 cut(s)	643
AcsI	RAATTY	1 cut(s)	492
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	275, 524
AflII	CTTAAG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	77, 170, 326
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
AlwI	GGATC	1 cut(s)	643
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	1 cut(s)	492
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AsuHPI	GGTGA	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	552
BciVI	GTATCC	1 cut(s)	412
BclI	TGATCA	1 cut(s)	223
BfrI	CTTAAG	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	364
BfuI	GTATCC	1 cut(s)	412
BisI	GCNGC	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	2 cut(s)	128, 272
BsaAI	YACGTR	1 cut(s)	382
BsaBI	GATNNNNATC	3 cut(s)	150, 513, 634
BsaXI	ACNNNNNCTCC	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 524
Bse8I	GATNNNNATC	3 cut(s)	150, 513, 634
BseBI	CCWGG	1 cut(s)	552
BseGI	GGATG	2 cut(s)	40, 463
BseJI	GATNNNNATC	3 cut(s)	150, 513, 634
BseLI	CCNNNNNNNGG	2 cut(s)	275, 524
BseMII	CTCAG	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	515
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	275, 524
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	223, 635
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	625
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	643
BspTI	CTTAAG	1 cut(s)	539
BssMI	GATC	2 cut(s)	223, 635
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	3 cut(s)	479, 608, 625
Bst6I	CTCTTC	1 cut(s)	193
BstAFI	CTTAAG	1 cut(s)	539
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	3 cut(s)	177, 240, 572
BstDEI	CTNAG	2 cut(s)	85, 612
BstF5I	GGATG	2 cut(s)	40, 463
BstKTI	GATC	2 cut(s)	226, 638
BstMBI	GATC	2 cut(s)	223, 635
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	550
BstV1I	GCAGC	1 cut(s)	515
BsuI	GTATCC	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	40, 463
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	3 cut(s)	177, 240, 572
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	3 cut(s)	176, 227, 430
CviJI	RGCY	7 cut(s)	136, 242, 279, 312, 346, 528, 550
CviKI_1	RGCY	7 cut(s)	136, 242, 279, 312, 346, 528, 550
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	85, 612
DpnI	GATC	2 cut(s)	225, 637
DpnII	GATC	2 cut(s)	223, 635
DrdI	GACNNNNNNGTC	1 cut(s)	201
DseDI	GACNNNNNNGTC	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	281
FaeI	CATG	3 cut(s)	179, 230, 433
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	3 cut(s)	175, 226, 429
FauNDI	CATATG	1 cut(s)	521
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	529
FokI	GGATG	2 cut(s)	27, 470
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	529
GluI	GCNGC	1 cut(s)	529
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	3 cut(s)	179, 230, 433
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	5 cut(s)	26, 104, 251, 287, 509
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	258
Hpy166II	GTNNAC	3 cut(s)	379, 415, 427
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	8 cut(s)	23, 192, 248, 258, 371, 441, 650, 663
Hpy8I	GTNNAC	3 cut(s)	379, 415, 427
HpyAV	CCTTC	5 cut(s)	71, 279, 357, 543, 656
HpyCH4III	ACNGT	3 cut(s)	479, 608, 625
HpyCH4IV	ACGT	2 cut(s)	381, 486
HpyCH4V	TGCA	5 cut(s)	4, 179, 334, 359, 498
HpyF3I	CTNAG	2 cut(s)	85, 612
HpySE526I	ACGT	2 cut(s)	381, 486
Hsp92II	CATG	3 cut(s)	179, 230, 433
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	223, 635
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	2 cut(s)	128, 272
MaeII	ACGT	2 cut(s)	381, 486
MaeIII	GTNAC	4 cut(s)	80, 473, 581, 619
MalI	GATC	2 cut(s)	225, 637
MboI	GATC	2 cut(s)	223, 635
MboII	GAAGA	2 cut(s)	180, 309
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	2 cut(s)	339, 492
MlyI	GAGTC	2 cut(s)	113, 281
MnlI	CCTC	8 cut(s)	43, 102, 136, 196, 216, 437, 595, 621
Mph1103I	ATGCAT	1 cut(s)	181
MseI	TTAA	2 cut(s)	33, 540
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	552
NdeI	CATATG	1 cut(s)	521
NdeII	GATC	2 cut(s)	223, 635
NlaIII	CATG	3 cut(s)	179, 230, 433
NmuCI	GTSAC	1 cut(s)	619
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PaqCI	CACCTGC	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	346
PfeI	GAWTC	3 cut(s)	26, 251, 509
PkrI	GCNGC	1 cut(s)	530
PleI	GAGTC	2 cut(s)	112, 281
PpsI	GAGTC	2 cut(s)	112, 281
Ppu21I	YACGTR	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	550
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	33, 540
SatI	GCNGC	1 cut(s)	529
Sau3AI	GATC	2 cut(s)	223, 635
SchI	GAGTC	2 cut(s)	113, 281
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	8 cut(s)	13, 82, 271, 314, 358, 384, 489, 556
SfaNI	GCATC	2 cut(s)	128, 272
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	2 cut(s)	339, 492
SseBI	AGGCCT	1 cut(s)	346
StuI	AGGCCT	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	550
TaaI	ACNGT	3 cut(s)	479, 608, 625
TaiI	ACGT	2 cut(s)	384, 489
TaqI	TCGA	1 cut(s)	16
TasI	AATT	2 cut(s)	339, 492
TfiI	GAWTC	3 cut(s)	26, 251, 509
Tru1I	TTAA	2 cut(s)	33, 540
Tru9I	TTAA	2 cut(s)	33, 540
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	1 cut(s)	528
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	539
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.