Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446963.1

Orthogroup ID

OG0030920

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1090

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446963.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 365 bp

atgtgcagtcacttagttcctccaagaacacggtcacctccctcggcatcttataactatcatcctgttgaggatttggatcgttttggtggagttgaaggtcacttggttacttcaagaacacaatcacctccctcaggcttctataaccatcatcctgttgaggactttgatcattctggtggagttgaaaggcatgcattttcctcttctggactgaatagttcgccgaagttgatagttgatcatgccagattgcaggcttatcaagaaccatctcgagtatcaccttctgtcagcacttttgactctggtagaagaactccggtcaactatgatgatgttcaagtcctgaaacgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051252 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0070920 GO:0080090 GO:0090065 GO:1900368

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM3AP_GANP SAC3_GANP

Protein Analysis

121

Amino Acids

13.43

Weight (kDa)

6.7

Isoelectric Point (pI)

79.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030920)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034210
rosa_multiflora	Rmu_co8446963.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AclWI	GGATC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	98, 117, 191, 347
AlwI	GGATC	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	27, 120, 279
AvaI	CYCGRG	1 cut(s)	279
AxyI	CCTNAGG	1 cut(s)	136
BccI	CCATC	2 cut(s)	159, 283
BclI	TGATCA	2 cut(s)	172, 244
BfaI	CTAG	1 cut(s)	363
BmeT110I	CYCGRG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	61, 154
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	79, 172, 244
BspCNI	CTCAG	1 cut(s)	149
BspPI	GGATC	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	3 cut(s)	79, 172, 244
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	198, 261
BstDEI	CTNAG	2 cut(s)	13, 136
BstEII	GGTNACC	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	61, 154
BstKTI	GATC	3 cut(s)	82, 175, 247
BstMBI	GATC	3 cut(s)	79, 172, 244
BstNSI	RCATGY	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	33
Bsu36I	CCTNAGG	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	61, 154
Cac8I	GCNNGC	2 cut(s)	198, 261
CviAII	CATG	2 cut(s)	197, 248
CviJI	RGCY	2 cut(s)	141, 263
CviKI_1	RGCY	2 cut(s)	141, 263
DdeI	CTNAG	2 cut(s)	13, 136
DpnI	GATC	3 cut(s)	81, 174, 246
DpnII	GATC	3 cut(s)	79, 172, 244
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco81I	CCTNAGG	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoO65I	GGTNACC	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	202
FaeI	CATG	2 cut(s)	200, 251
FaiI	YATR	5 cut(s)	54, 147, 198, 249, 336
FatI	CATG	2 cut(s)	196, 247
FbaI	TGATCA	2 cut(s)	172, 244
FokI	GGATG	2 cut(s)	48, 141
FspBI	CTAG	1 cut(s)	363
HapII	CCGG	1 cut(s)	326
Hin1II	CATG	2 cut(s)	200, 251
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	3 cut(s)	27, 120, 279
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188III	TCNNGA	5 cut(s)	117, 213, 269, 279, 352
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	92, 300
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	6, 200, 259
HpyF3I	CTNAG	2 cut(s)	13, 136
Hsp92II	CATG	2 cut(s)	200, 251
Ksp22I	TGATCA	2 cut(s)	172, 244
Kzo9I	GATC	3 cut(s)	79, 172, 244
LpnPI	CCDG	9 cut(s)	78, 123, 165, 171, 198, 245, 265, 297, 339
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	4 cut(s)	8, 33, 101, 109
MalI	GATC	3 cut(s)	81, 174, 246
MboI	GATC	3 cut(s)	79, 172, 244
MboII	GAAGA	2 cut(s)	201, 330
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	8 cut(s)	30, 48, 52, 64, 141, 145, 157, 217
Mph1103I	ATGCAT	1 cut(s)	202
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	1 cut(s)	326
NdeII	GATC	3 cut(s)	79, 172, 244
NlaIII	CATG	2 cut(s)	200, 251
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	3 cut(s)	8, 33, 101
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	1 cut(s)	200
PaeI	GCATGC	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	279
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	54
PspEI	GGTNACC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	79, 172, 244
SchI	GAGTC	1 cut(s)	302
SetI	ASST	4 cut(s)	40, 103, 133, 292
SfaNI	GCATC	1 cut(s)	56
Sfr274I	CTCGAG	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
SphI	GCATGC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	280
TseFI	GTSAC	3 cut(s)	8, 33, 101
Tsp45I	GTSAC	3 cut(s)	8, 33, 101
XagI	CCTNNNNNAGG	1 cut(s)	135
XceI	RCATGY	1 cut(s)	200
XhoI	CTCGAG	1 cut(s)	279
XspI	CTAG	1 cut(s)	363
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.