Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0030946

Physical Location & Seq

Genomic Coordinates Reverse (-)

41560576 .. 41563827

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034366

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCAATTGCACTTAGAGTAGAATATTACATTCAATGTGACCTGAAAGTTATCCATAAGGATGTGAAGGCATCAAATGTACTTGATGACTACTGTGAAGCCGTAGTCGGAGATTTTGATTTGGCAAAGCTTTTGAATCACCAAGATTCACATGTCACCACTGCAGTGAGGGGCGTTGCGAGGGTCGGCGTAGAAGCTGAGCCCCGGCTTGATCTGAAGGAAGAGCTCAAGATCTTTGCCGATGGGGAGCAGATTGAAGTCGCGGTCAAAAGAGAAGACATGGACGTGGTTGCCAGAGCTTCTGGCGTCAAAGATGATGGCATAAGAAGTGGAAGCGGGAGTCTGAATGGGAATGTGAGAGGAGCTAATGAGGTAGAGGAGCGCGGTCAAGAGGAGAAGAGGGGCGGAAATGAGGAAGAGGAGATTCGGTGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

15.98

Weight (kDa)

4.75

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030946)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034366 RLG00000035461

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	263, 384
AciI	CCGC	4 cut(s)	263, 336, 384, 405
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	35, 136, 257
AjiI	CACGTC	1 cut(s)	286
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	5 cut(s)	130, 197, 226, 299, 365
AluI	AGCT	5 cut(s)	130, 197, 226, 299, 365
Alw21I	GWGCWC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	384
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	131, 148
BanII	GRGCYC	2 cut(s)	204, 228
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	228
BccI	CCATC	2 cut(s)	236, 311
BceAI	ACGGC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	205
BfmI	CTRYAG	1 cut(s)	162
BglII	AGATCT	1 cut(s)	231
BlpI	GCTNAGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	205
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	203
BsaXI	ACNNNNNCTCC	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	4 cut(s)	375, 392, 407, 434
Bsh1236I	CGCG	2 cut(s)	263, 384
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	204, 228
Bsp143I	GATC	2 cut(s)	211, 231
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	4 cut(s)	263, 336, 384, 405
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	2 cut(s)	263, 384
BspMAI	CTGCAG	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	2 cut(s)	211, 231
BssNI	GRCGYC	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	3 cut(s)	216, 392, 411
BstACI	GRCGYC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	14, 198
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	2 cut(s)	263, 384
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	2 cut(s)	214, 234
BstMBI	GATC	2 cut(s)	211, 231
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	2 cut(s)	263, 384
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	2 cut(s)	159, 171
BtsIMutI	CAGTG	2 cut(s)	159, 171
CfoI	GCGC	1 cut(s)	384
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	2 cut(s)	152, 280
CviJI	RGCY	8 cut(s)	101, 130, 197, 202, 208, 226, 299, 365
CviKI_1	RGCY	8 cut(s)	101, 130, 197, 202, 208, 226, 299, 365
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	2 cut(s)	14, 198
DpnI	GATC	2 cut(s)	213, 233
DpnII	GATC	2 cut(s)	211, 231
Eam1104I	CTCTTC	3 cut(s)	216, 392, 411
EarI	CTCTTC	3 cut(s)	216, 392, 411
EciI	GGCGGA	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	204, 228
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	204, 228
FaeI	CATG	2 cut(s)	155, 283
FaiI	YATR	4 cut(s)	57, 153, 281, 323
FatI	CATG	2 cut(s)	151, 279
FauI	CCCGC	1 cut(s)	329
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	2 cut(s)	204, 228
GlaI	GCGC	1 cut(s)	383
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	155, 283
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	4 cut(s)	136, 146, 340, 424
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	131, 148
Hpy188I	TCNGA	3 cut(s)	110, 216, 345
Hpy188III	TCNNGA	2 cut(s)	229, 389
HpyAV	CCTTC	2 cut(s)	61, 211
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	11, 164
HpyF3I	CTNAG	2 cut(s)	14, 198
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	155, 283
HspAI	GCGC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	211, 231
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	3 cut(s)	247, 362, 379
LpnPI	CCDG	4 cut(s)	56, 218, 288, 307
LweI	GCATC	1 cut(s)	80
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	38, 154
MalI	GATC	2 cut(s)	213, 233
MboI	GATC	2 cut(s)	211, 231
MboII	GAAGA	4 cut(s)	233, 287, 409, 428
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	204, 228
MluCI	AATT	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	162, 174, 353, 364, 370, 385, 393, 406, 412
MslI	CAYNNNNRTG	3 cut(s)	60, 164, 284
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	205
MunI	CAATTG	1 cut(s)	6
MvnI	CGCG	2 cut(s)	263, 384
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	2 cut(s)	211, 231
NlaIII	CATG	2 cut(s)	155, 283
NmuCI	GTSAC	2 cut(s)	38, 154
NspI	RCATGY	1 cut(s)	155
OliI	CACNNNNGTG	1 cut(s)	164
PciI	ACATGT	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	136, 146, 424
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PscI	ACATGT	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	3 cut(s)	60, 164, 284
SacI	GAGCTC	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	211, 231
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	2 cut(s)	204, 228
SetI	ASST	8 cut(s)	45, 132, 199, 228, 288, 301, 367, 375
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	3 cut(s)	60, 164, 284
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	4 cut(s)	263, 336, 384, 405
SspI	AATATT	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	288
TasI	AATT	1 cut(s)	6
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	136, 146, 424
TscAI	CASTG	2 cut(s)	166, 171
TseFI	GTSAC	2 cut(s)	38, 154
Tsp45I	GTSAC	2 cut(s)	38, 154
TspRI	CASTG	2 cut(s)	166, 171
XceI	RCATGY	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.