RLG00000035461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0030946
Physical Location & Seq
Reverse (-)
67172143 .. 67172718
576 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035461

Sequence Viewer

Length: 381 bp
ATGGGCGGCGCTGCGAGGGTCGGCGGTGTAGAAGCTGATCTCCGGCTTGGTCTGAAGGAAGAGGTCGAGATCTTTGTCGATGGGGAGCACATTGAGTTTGCGGTCAAAGGAGAAGACATGGACGCGGCTGCCAGAGCTTCCGGCGTCAAAGATGACGGAGTAGGAAGTGGAAACGGGAATCTAAATAGGAATGTGAGAGAAGGGCGTGAGGTAGAGGAGCGTGGTCAAAAGGAGAAGAGGGACGTAGATGAGGAGGAGGAGGCTCTGGTACTTGTAGAGCCTTTCAGAGAAGGAGTCGGAGTTCCATGGATGGAGGATGAGCACAACCTATTTAAGCTTGGATTAGAGCTGAGATTAAGAGAGACCGAGTGTTCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.87

Weight (kDa)

4.51

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030946)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034366 RLG00000035461

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 125
AciI CCGC 4 cut(s) 6, 24, 101, 125
AcuI CTGAAG 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 270
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 5 cut(s) 35, 137, 337, 349, 378
AluI AGCT 5 cut(s) 35, 137, 337, 349, 378
Alw21I GWGCWC 2 cut(s) 90, 324
Alw26I GTCTC 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 11, 128
AspLEI GCGC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 2 cut(s) 90, 324
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 74, 304
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 2 cut(s) 375, 379
BfoI RGCGCY 1 cut(s) 12
BglII AGATCT 1 cut(s) 69
BisI GCNGC 4 cut(s) 7, 12, 126, 129
BlsI GCNGC 4 cut(s) 8, 13, 127, 130
BpiI GAAGAC 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 315, 322
BseMII CTCAG 1 cut(s) 341
BseRI GAGGAG 4 cut(s) 230, 266, 269, 272
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 125
BsiHKAI GWGCWC 2 cut(s) 90, 324
BsiSI CCGG 2 cut(s) 43, 141
BslFI GGGAC 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 90, 324
Bsp143I GATC 2 cut(s) 37, 69
Bsp19I CCATGG 1 cut(s) 305
BspACI CCGC 4 cut(s) 6, 24, 101, 125
BspCNI CTCAG 1 cut(s) 342
BspFNI CGCG 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 2 cut(s) 37, 69
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 305
Bst6I CTCTTC 2 cut(s) 54, 230
BstACI GRCGYC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 350
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 315, 322
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 2 cut(s) 40, 72
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 37, 69
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 305
BtsCI GGATG 2 cut(s) 315, 322
CfoI GCGC 1 cut(s) 11
CseI GACGC 2 cut(s) 131, 133
Csp6I GTAC 1 cut(s) 269
CviAII CATG 2 cut(s) 118, 306
CviJI RGCY 9 cut(s) 35, 46, 128, 137, 263, 280, 337, 349, 378
CviKI_1 RGCY 9 cut(s) 35, 46, 128, 137, 263, 280, 337, 349, 378
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 350
DpnI GATC 2 cut(s) 39, 71
DpnII GATC 2 cut(s) 37, 69
Eam1104I CTCTTC 2 cut(s) 54, 230
EarI CTCTTC 2 cut(s) 54, 230
Eco130I CCWWGG 1 cut(s) 305
Eco31I GGTCTC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 2 cut(s) 121, 309
FaiI YATR 2 cut(s) 119, 307
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 117, 305
Fnu4HI GCNGC 4 cut(s) 7, 12, 126, 129
FokI GGATG 2 cut(s) 322, 329
Fsp4HI GCNGC 4 cut(s) 7, 12, 126, 129
FspBI CTAG 2 cut(s) 375, 379
GlaI GCGC 1 cut(s) 10
GluI GCNGC 4 cut(s) 7, 12, 126, 129
HaeII RGCGCY 1 cut(s) 12
HapII CCGG 2 cut(s) 43, 141
HgaI GACGC 2 cut(s) 131, 133
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 2 cut(s) 121, 309
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 2 cut(s) 178, 294
HpaII CCGG 2 cut(s) 43, 141
Hpy188I TCNGA 3 cut(s) 54, 287, 299
Hpy188III TCNNGA 1 cut(s) 67
HpyAV CCTTC 3 cut(s) 49, 194, 284
HpyCH4IV ACGT 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 121, 309
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 2 cut(s) 37, 69
LmnI GCTCC 2 cut(s) 85, 217
LpnPI CCDG 4 cut(s) 56, 145, 154, 251
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 2 cut(s) 375, 379
MaeII ACGT 1 cut(s) 243
MalI GATC 2 cut(s) 39, 71
MboI GATC 2 cut(s) 37, 69
MboII GAAGA 3 cut(s) 71, 125, 247
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 2 cut(s) 90, 324
MlyI GAGTC 1 cut(s) 303
MmeI TCCRAC 1 cut(s) 277
MseI TTAA 2 cut(s) 333, 356
MspI CCGG 2 cut(s) 43, 141
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 134
NcoI CCATGG 1 cut(s) 305
NdeII GATC 2 cut(s) 37, 69
NlaIII CATG 2 cut(s) 121, 309
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 4 cut(s) 8, 13, 127, 130
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 333, 356
SatI GCNGC 4 cut(s) 7, 12, 126, 129
Sau3AI GATC 2 cut(s) 37, 69
SchI GAGTC 1 cut(s) 303
SduI GDGCHC 2 cut(s) 90, 324
SetI ASST 9 cut(s) 37, 66, 139, 213, 246, 330, 339, 351, 380
SsiI CCGC 4 cut(s) 6, 24, 101, 125
SspMI CTAG 2 cut(s) 375, 379
StyI CCWWGG 1 cut(s) 305
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 66, 78
TaqII GACCGA 1 cut(s) 380
TauI GCSGC 2 cut(s) 9, 128
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 333, 356
Tru9I TTAA 2 cut(s) 333, 356
TseI GCWGC 2 cut(s) 11, 128
TspGWI ACGGA 1 cut(s) 171
XspI CTAG 2 cut(s) 375, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.