RLG00000036829

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0030945
Physical Location & Seq
Reverse (-)
85353908 .. 85355773
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036829

Sequence Viewer

Length: 687 bp
ATGAAGCTCCAACCTTTAGCCCAGGATCGGAGTCGGAACCTACTACCCGCAAGTCACCGGCTTCTCAGCCCCTATCATCGTGTCCTCATTGCCCGATTCTGTGTCGACATCGTTGTTGGTGGCGGAGACGCATTCGAAGAAATGGCGGCAAACATTTATCTCAGTATCTTATCAGAAGAAGATGCCTGGAACTTGTTTCTGAAGAAGACAAGAAAGTCATTTCAAAAGTCTACAGATTTCTATGAAGTAGCCAGAAGGGTAGCTAGAGAATGTGCTGGTCTCCCAGTTGCGTTGATAGCAGTTGCGAGGGCACCAGGAAATAAAAGCTTCGAAGAATGGAAAGAAGCAGCTCAAAGACTGGAGATGTCTCAACGCGCCAACCTTGACGAGGAGAAAGATGTGTTCAAGTGTATAAAGTTGAGCTATGGTTACCTGGATGATAATGCCGATGTGTCCAAACGTCAAGCCAAGTATTGCTTCTTGCTTTGCTGCCTATTCCCAGAAGATTATGATATCCAAATAGAAGACTTCATGAAGTATGTCTTCGGGAAAGGATTGTTTCGAGATGTCAACTGCACAATAGAAACTGCCAGAGCCAACGCAAAATCACTGACCGACCACCTTAAAGATTCTTGTTTGCTTTTGGACAGGTTCCAAGCATCTTCTTCTGATAAGATATTGAGATAA

Protein Analysis

229

Amino Acids

26.1

Weight (kDa)

7.52

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030945)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036829
rosa_multiflora Rmu_sc0001148.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 214
AccB1I GGYRCC 1 cut(s) 310
AccI GTMKAC 2 cut(s) 105, 230
AccII CGCG 1 cut(s) 375
AciI CCGC 3 cut(s) 48, 123, 146
AclWI GGATC 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 27, 388
AgsI TTSAA 2 cut(s) 224, 406
AjnI CCWGG 4 cut(s) 21, 185, 313, 432
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 5 cut(s) 7, 263, 327, 350, 423
AluI AGCT 5 cut(s) 7, 263, 327, 350, 423
Alw26I GTCTC 3 cut(s) 120, 284, 372
AlwI GGATC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 347, 489
AspLEI GCGC 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 47
AsuII TTCGAA 2 cut(s) 135, 330
BaeGI GKGCMC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 310
BbsI GAAGAC 3 cut(s) 212, 531, 535
BbvI GCAGC 2 cut(s) 359, 476
BciT130I CCWGG 4 cut(s) 23, 187, 315, 434
BcoDI GTCTC 3 cut(s) 120, 284, 372
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 3 cut(s) 147, 348, 490
BlsI GCNGC 3 cut(s) 148, 349, 491
Bme1390I CCNGG 4 cut(s) 23, 187, 315, 434
BmiI GGNNCC 3 cut(s) 38, 312, 653
BmrFI CCNGG 4 cut(s) 23, 187, 315, 434
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 172, 668
BmuI ACTGGG 1 cut(s) 278
BpiI GAAGAC 3 cut(s) 212, 531, 535
BpmI CTGGAG 1 cut(s) 380
Bpu14I TTCGAA 2 cut(s) 135, 330
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 388
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 284, 363
Bse3DI GCAATG 1 cut(s) 87
BseBI CCWGG 4 cut(s) 23, 187, 315, 434
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 2 cut(s) 27, 388
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 2 cut(s) 79, 175
BseNI ACTGG 2 cut(s) 284, 363
BseRI GAGGAG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 2 cut(s) 359, 476
BsgI GTGCAG 1 cut(s) 559
Bsh1236I CGCG 1 cut(s) 375
BshNI GGYRCC 1 cut(s) 310
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 27, 388
BsmAI GTCTC 3 cut(s) 120, 284, 372
BsmBI CGTCTC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 284
Bsp119I TTCGAA 2 cut(s) 135, 330
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 3 cut(s) 48, 123, 146
BspCNI CTCAG 2 cut(s) 78, 174
BspFNI CGCG 1 cut(s) 375
BspHI TCATGA 1 cut(s) 531
BspLI GGNNCC 3 cut(s) 38, 312, 653
BspPI GGATC 1 cut(s) 33
BspT104I TTCGAA 2 cut(s) 135, 330
BspT107I GGYRCC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 2 cut(s) 284, 363
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 25
Bst2UI CCWGG 4 cut(s) 23, 187, 315, 434
BstBI TTCGAA 2 cut(s) 135, 330
BstDEI CTNAG 2 cut(s) 65, 161
BstEII GGTNACC 1 cut(s) 428
BstENI CCTNNNNNAGG 1 cut(s) 386
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 1 cut(s) 375
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 3 cut(s) 120, 284, 372
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 4 cut(s) 23, 187, 315, 434
BstPI GGTNACC 1 cut(s) 428
BstSCI CCNGG 4 cut(s) 21, 185, 313, 432
BstSFI CTRYAG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 313
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 359, 476
BstV2I GAAGAC 3 cut(s) 212, 531, 535
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 608
CciI TCATGA 1 cut(s) 531
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 57
CseI GACGC 1 cut(s) 137
CviAII CATG 1 cut(s) 532
DdeI CTNAG 2 cut(s) 65, 161
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DrdI GACNNNNNNGTC 1 cut(s) 214
DseDI GACNNNNNNGTC 1 cut(s) 214
EciI GGCGGA 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 284
Eco32I GATATC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 221
Eco91I GGTNACC 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 428
EcoRII CCWGG 4 cut(s) 21, 185, 313, 432
EcoRV GATATC 1 cut(s) 514
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 1 cut(s) 535
FaiI YATR 6 cut(s) 243, 413, 426, 510, 533, 540
FalI AAGNNNNNCTT 4 cut(s) 461, 493, 527, 559
FatI CATG 1 cut(s) 531
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 2 cut(s) 105, 230
Fnu4HI GCNGC 3 cut(s) 147, 348, 490
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 3 cut(s) 147, 348, 490
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 376
GluI GCNGC 3 cut(s) 147, 348, 490
GsuI CTGGAG 1 cut(s) 380
HapII CCGG 1 cut(s) 58
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 377
Hin1II CATG 1 cut(s) 535
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 2 cut(s) 106, 571
HindII GTYRAC 2 cut(s) 106, 571
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 3 cut(s) 31, 96, 629
HpaII CCGG 1 cut(s) 58
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 3 cut(s) 106, 231, 571
Hpy188I TCNGA 5 cut(s) 30, 36, 175, 201, 670
Hpy188III TCNNGA 3 cut(s) 532, 547, 563
Hpy8I GTNNAC 3 cut(s) 106, 231, 571
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 1 cut(s) 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 65, 161
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 1 cut(s) 535
HspAI GCGC 1 cut(s) 375
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 12
Lsp1109I GCAGC 2 cut(s) 359, 476
LweI GCATC 2 cut(s) 172, 668
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 2 cut(s) 53, 428
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 313
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 2 cut(s) 14, 34
MnlI CCTC 3 cut(s) 95, 300, 382
MseI TTAA 1 cut(s) 624
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 4 cut(s) 23, 187, 315, 434
Mva1269I GAATGC 1 cut(s) 131
MvaI CCWGG 4 cut(s) 23, 187, 315, 434
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 535
NlaIV GGNNCC 3 cut(s) 38, 312, 653
NmuCI GTSAC 1 cut(s) 53
NspV TTCGAA 2 cut(s) 135, 330
PagI TCATGA 1 cut(s) 531
PctI GAATGC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 96, 629
PkrI GCNGC 3 cut(s) 148, 349, 491
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 4 cut(s) 21, 185, 313, 432
PspEI GGTNACC 1 cut(s) 428
PspGI CCWGG 4 cut(s) 21, 185, 313, 432
PspN4I GGNNCC 3 cut(s) 38, 312, 653
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 3 cut(s) 147, 348, 490
Sau3AI GATC 1 cut(s) 25
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 4 cut(s) 23, 187, 315, 434
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 2 cut(s) 172, 668
SfcI CTRYAG 1 cut(s) 231
SfuI TTCGAA 2 cut(s) 135, 330
SsiI CCGC 3 cut(s) 48, 123, 146
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 4 cut(s) 21, 185, 313, 432
TaiI ACGT 1 cut(s) 463
TaqI TCGA 4 cut(s) 105, 135, 330, 562
TaqII GACCGA 1 cut(s) 629
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 96, 629
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 1 cut(s) 615
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 347, 489
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 4 cut(s) 17, 258, 520, 548
TspRI CASTG 1 cut(s) 615
XagI CCTNNNNNAGG 1 cut(s) 386
XmiI GTMKAC 2 cut(s) 105, 230
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.