Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7958289.1

Orthogroup ID

OG0031279

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 431

Gene Structure 430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7958289.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 308 bp

atggatcagcccttggatgcttctactccttttaaggaagggctttcctggcaggtgcaccgtgctcctgttcttgccatggttatgacttcttatggtaaactagctcatcacagccaatatctttctggtgtcctgtcgacagttgccaatgttagcatacctctgatatcatgtttctctgatccaggtgatatgtggtcaggttctgagggtggtgttattaaaatctggccatgggaatccattgaaaaatctctttctctaaagccagaggaaagacacatggcagctttactggtggagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

5.45

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031279)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co7958289.1_g000001 Rmu_sc0003673.1_g000026

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	140
AclWI	GGATC	2 cut(s)	12, 179
AcoI	YGGCCR	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	47, 187
AluBI	AGCT	2 cut(s)	107, 293
AluI	AGCT	2 cut(s)	107, 293
Alw21I	GWGCWC	2 cut(s)	60, 67
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	12, 179
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	233
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	235
Bbv12I	GWGCWC	2 cut(s)	60, 67
BbvI	GCAGC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	49, 189
BfaI	CTAG	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	49, 189
BmrFI	CCNGG	2 cut(s)	49, 189
BmsI	GCATC	1 cut(s)	7
BsaJI	CCNNGG	3 cut(s)	12, 78, 236
Bse1I	ACTGG	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	49, 189
BseDI	CCNNGG	3 cut(s)	12, 78, 236
BseGI	GGATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	302
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	2 cut(s)	60, 67
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	60, 67
Bsp143I	GATC	2 cut(s)	4, 184
Bsp19I	CCATGG	2 cut(s)	78, 236
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	12, 179
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	3 cut(s)	12, 78, 236
BssMI	GATC	2 cut(s)	4, 184
BssT1I	CCWWGG	3 cut(s)	12, 78, 236
Bst2UI	CCWGG	2 cut(s)	49, 189
Bst4CI	ACNGT	2 cut(s)	62, 145
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	2 cut(s)	78, 236
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	2 cut(s)	7, 187
BstMBI	GATC	2 cut(s)	4, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	2 cut(s)	49, 189
BstSCI	CCNGG	2 cut(s)	47, 187
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	2 cut(s)	78, 236
BtsCI	GGATG	1 cut(s)	22
BveI	ACCTGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	209
CviAII	CATG	4 cut(s)	79, 174, 237, 286
CviJI	RGCY	7 cut(s)	10, 43, 107, 117, 235, 271, 293
CviKI_1	RGCY	7 cut(s)	10, 43, 107, 117, 235, 271, 293
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	6, 186
DpnII	GATC	2 cut(s)	4, 184
EaeI	YGGCCR	1 cut(s)	233
Eco130I	CCWWGG	3 cut(s)	12, 78, 236
Eco32I	GATATC	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	47, 187
EcoRV	GATATC	1 cut(s)	171
EcoT14I	CCWWGG	3 cut(s)	12, 78, 236
ErhI	CCWWGG	3 cut(s)	12, 78, 236
FaeI	CATG	4 cut(s)	82, 177, 240, 289
FaiI	YATR	8 cut(s)	80, 86, 96, 161, 175, 197, 238, 287
FatI	CATG	4 cut(s)	78, 173, 236, 285
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	235
Hin1II	CATG	4 cut(s)	82, 177, 240, 289
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	1 cut(s)	242
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	3 cut(s)	58, 101, 141
Hpy188I	TCNGA	3 cut(s)	168, 184, 211
Hpy8I	GTNNAC	3 cut(s)	58, 101, 141
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	62, 145
HpyCH4V	TGCA	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	82, 177, 240, 289
Kzo9I	GATC	2 cut(s)	4, 184
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	104
MalI	GATC	2 cut(s)	6, 186
MboI	GATC	2 cut(s)	4, 184
MhlI	GDGCHC	2 cut(s)	60, 67
MlsI	TGGCCA	1 cut(s)	235
MluNI	TGGCCA	1 cut(s)	235
MnlI	CCTC	3 cut(s)	174, 205, 268
Mox20I	TGGCCA	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	2 cut(s)	33, 225
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	49, 189
MvaI	CCWGG	2 cut(s)	49, 189
MwoI	GCNNNNNNNGC	1 cut(s)	49
NcoI	CCATGG	2 cut(s)	78, 236
NdeII	GATC	2 cut(s)	4, 184
NlaIII	CATG	4 cut(s)	82, 177, 240, 289
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	47, 187
PspGI	CCWGG	2 cut(s)	47, 187
PstNI	CAGNNNCTG	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	83
SalI	GTCGAC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	33, 225
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	2 cut(s)	4, 184
ScrFI	CCNGG	2 cut(s)	49, 189
SduI	GDGCHC	2 cut(s)	60, 67
SetI	ASST	6 cut(s)	57, 109, 166, 193, 208, 295
SfaNI	GCATC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	83
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	47, 187
StyI	CCWWGG	3 cut(s)	12, 78, 236
TaaI	ACNGT	2 cut(s)	62, 145
TaqI	TCGA	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	33, 225
Tru9I	TTAA	2 cut(s)	33, 225
TseI	GCWGC	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	2 cut(s)	125, 195
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.