Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003673.1

Orthogroup ID

OG0031279

Physical Location & Seq

Genomic Coordinates Forward (+)

103517 .. 104880

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003673.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atggatcagcctttggatgcttctactccttttaaggaagggctttcctggcaggcgcaccgtgctcctgttcttgccatggttatgacttcttatggtaaactagctcatcgcagccagtatctttctggtgtcctgtcgaccgttgccaatgttagcatacctctgatatcatgtttctctgatccaggtgatatgtggtcaggttttgagggtggtgttattaaaatctggccatgggaatccattgaaatatctctttctctaaagccagaggaaagacacatggcagctttactggtggagaggtcatgcattgaccttaggagccagggggaaaagaaggctgtgaaggcggcgcgtgacgatgaagaacctcagctttgtggtgcttatttgcttatgctgcaaatatttacacctatctccgccgtatggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

147

Amino Acids

16.34

Weight (kDa)

5.58

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031279)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co7958289.1_g000001 Rmu_sc0003673.1_g000026

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	1 cut(s)	361
AciI	CCGC	2 cut(s)	356, 429
AclWI	GGATC	2 cut(s)	12, 179
AcoI	YGGCCR	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	435, 438
AgsI	TTSAA	1 cut(s)	251
AjnI	CCWGG	3 cut(s)	47, 187, 330
AluBI	AGCT	3 cut(s)	107, 293, 382
AluI	AGCT	3 cut(s)	107, 293, 382
Alw21I	GWGCWC	1 cut(s)	67
AlwI	GGATC	2 cut(s)	12, 179
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	114, 290, 406
AspLEI	GCGC	2 cut(s)	58, 361
AsuHPI	GGTGA	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	67
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	126, 302, 393
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	3 cut(s)	49, 189, 332
BfaI	CTAG	1 cut(s)	104
BisI	GCNGC	4 cut(s)	115, 291, 357, 407
BlsI	GCNGC	4 cut(s)	116, 292, 358, 408
Bme1390I	CCNGG	3 cut(s)	49, 189, 332
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	3 cut(s)	49, 189, 332
BmsI	GCATC	1 cut(s)	7
Bpu10I	CCTNAGC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	78, 236, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 438
Bse1I	ACTGG	2 cut(s)	118, 303
Bse21I	CCTNAGG	1 cut(s)	323
BseBI	CCWGG	3 cut(s)	49, 189, 332
BseDI	CCNNGG	3 cut(s)	78, 236, 331
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	435, 438
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	118, 303
BseXI	GCAGC	3 cut(s)	126, 302, 393
Bsh1236I	CGCG	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	435, 438
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	4, 184
Bsp19I	CCATGG	2 cut(s)	78, 236
BspACI	CCGC	2 cut(s)	356, 429
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	12, 179
BsrI	ACTGG	2 cut(s)	118, 303
BssECI	CCNNGG	3 cut(s)	78, 236, 331
BssMI	GATC	2 cut(s)	4, 184
BssT1I	CCWWGG	2 cut(s)	78, 236
Bst2UI	CCWGG	3 cut(s)	49, 189, 332
Bst4CI	ACNGT	2 cut(s)	62, 145
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	323, 378
BstDSI	CCRYGG	2 cut(s)	78, 236
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	58, 361
BstKTI	GATC	2 cut(s)	7, 187
BstMBI	GATC	2 cut(s)	4, 184
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 62, 353, 406
BstNI	CCWGG	3 cut(s)	49, 189, 332
BstSCI	CCNGG	3 cut(s)	47, 187, 330
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	3 cut(s)	126, 302, 393
Bsu36I	CCTNAGG	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	2 cut(s)	78, 236
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	2 cut(s)	58, 361
CviAII	CATG	5 cut(s)	79, 174, 237, 286, 312
DdeI	CTNAG	2 cut(s)	323, 378
DpnI	GATC	2 cut(s)	6, 186
DpnII	GATC	2 cut(s)	4, 184
EaeI	YGGCCR	1 cut(s)	233
EciI	GGCGGA	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	78, 236
Eco32I	GATATC	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	47, 187, 330
EcoRV	GATATC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	78, 236
EcoT22I	ATGCAT	1 cut(s)	317
ErhI	CCWWGG	2 cut(s)	78, 236
FaeI	CATG	5 cut(s)	82, 177, 240, 289, 315
FatI	CATG	5 cut(s)	78, 173, 236, 285, 311
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	4 cut(s)	115, 291, 357, 407
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	4 cut(s)	115, 291, 357, 407
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	2 cut(s)	57, 360
GluI	GCNGC	4 cut(s)	115, 291, 357, 407
HaeIII	GGCC	1 cut(s)	235
HhaI	GCGC	2 cut(s)	58, 361
Hin1II	CATG	5 cut(s)	82, 177, 240, 289, 315
Hin6I	GCGC	2 cut(s)	56, 359
HinP1I	GCGC	2 cut(s)	56, 359
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	1 cut(s)	242
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	2 cut(s)	101, 141
Hpy188I	TCNGA	2 cut(s)	168, 184
Hpy8I	GTNNAC	2 cut(s)	101, 141
HpyAV	CCTTC	3 cut(s)	32, 337, 346
HpyCH4III	ACNGT	2 cut(s)	62, 145
HpyCH4V	TGCA	2 cut(s)	315, 409
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 62, 353, 406
HpyF3I	CTNAG	2 cut(s)	323, 378
Hsp92II	CATG	5 cut(s)	82, 177, 240, 289, 315
HspAI	GCGC	2 cut(s)	56, 359
Kzo9I	GATC	2 cut(s)	4, 184
LmnI	GCTCC	2 cut(s)	70, 327
Lsp1109I	GCAGC	3 cut(s)	126, 302, 393
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	6, 186
MboI	GATC	2 cut(s)	4, 184
MboII	GAAGA	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	235
MluNI	TGGCCA	1 cut(s)	235
MnlI	CCTC	6 cut(s)	174, 205, 268, 300, 387, 432
Mox20I	TGGCCA	1 cut(s)	235
Mph1103I	ATGCAT	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	2 cut(s)	33, 225
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	235
MspR9I	CCNGG	3 cut(s)	49, 189, 332
MvaI	CCWGG	3 cut(s)	49, 189, 332
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	4 cut(s)	49, 62, 353, 406
NcoI	CCATGG	2 cut(s)	78, 236
NdeII	GATC	2 cut(s)	4, 184
NlaIII	CATG	5 cut(s)	82, 177, 240, 289, 315
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	116, 292, 358, 408
Psp6I	CCWGG	3 cut(s)	47, 187, 330
PspGI	CCWGG	3 cut(s)	47, 187, 330
PspN4I	GGNNCC	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	83
SalI	GTCGAC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	33, 225
SatI	GCNGC	4 cut(s)	115, 291, 357, 407
Sau3AI	GATC	2 cut(s)	4, 184
ScrFI	CCNGG	3 cut(s)	49, 189, 332
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	83
SsiI	CCGC	2 cut(s)	356, 429
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	47, 187, 330
StyI	CCWWGG	2 cut(s)	78, 236
TaaI	ACNGT	2 cut(s)	62, 145
TaqI	TCGA	1 cut(s)	140
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	33, 225
Tru9I	TTAA	2 cut(s)	33, 225
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	3 cut(s)	114, 290, 406
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	2 cut(s)	125, 195
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.