Rmu_co7962524.1_g000001

RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7962524.1
OG0024678
Physical Location & Seq
Reverse (-)
1 .. 381
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7962524.1_g000001.1.cds

Sequence Viewer

Length: 352 bp
atggctctagtgcgaccaggctcagcgaaccaaccggcgaagatccgatggggcgagctcgacgaggacgacggcgaggacctcgacttcctcctgccgccgaagcaggtgattggccccgacgagaacgggatcaagaaggtgattgagtacaaattcaacgacgagggcaataaggtcaagatcaccaccatcactcgaacccggaaactcgccaatgctaggctcagcaagcgcgccgtcgagcgccgctcctggcccaaattcggcgacgccgttcatgaggacgtcggcgccaggctcaccatggtctccactgaagagatcctcctcgaacgccctagggctcttg

Protein Analysis

117

Amino Acids

13.24

Weight (kDa)

7.99

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024678)

Species Orthologous Gene IDs
pyrus_communis pycom11g07840
rosa_multiflora Rmu_co7962524.1_g000001 Rmu_ssc0000249.1_g000026

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 97
AatII GACGTC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 1 cut(s) 237
AciI CCGC 2 cut(s) 98, 250
AclWI GGATC 3 cut(s) 37, 140, 319
AcsI RAATTY 2 cut(s) 155, 263
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 3 cut(s) 273, 288, 294
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 222, 266
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 3 cut(s) 16, 254, 296
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 3 cut(s) 37, 140, 319
AoxI GGCC 2 cut(s) 115, 257
ApoI RAATTY 2 cut(s) 155, 263
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 4 cut(s) 237, 239, 249, 296
AspS9I GGNCC 3 cut(s) 79, 116, 258
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 4 cut(s) 121, 154, 178, 295
AvaII GGWCC 1 cut(s) 79
AvrII CCTAGG 1 cut(s) 341
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 2 cut(s) 60, 349
Bbv12I GWGCWC 1 cut(s) 60
BccI CCATC 2 cut(s) 42, 200
BceAI ACGGC 3 cut(s) 88, 224, 260
BciT130I CCWGG 3 cut(s) 18, 256, 298
BcnI CCSGG 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 316
BfaI CTAG 3 cut(s) 8, 222, 342
BfoI RGCGCY 2 cut(s) 250, 297
BfuAI ACCTGC 1 cut(s) 97
BisI GCNGC 2 cut(s) 98, 250
BlnI CCTAGG 1 cut(s) 341
BlpI GCTNAGC 2 cut(s) 22, 227
BlsI GCNGC 2 cut(s) 99, 251
Bme1390I CCNGG 4 cut(s) 18, 205, 256, 298
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 79, 116, 258
BmiI GGNNCC 2 cut(s) 118, 295
BmrFI CCNGG 4 cut(s) 18, 205, 256, 298
BplI GAGNNNNNCTC 2 cut(s) 236, 268
Bpu1102I GCTNAGC 2 cut(s) 22, 227
BpuMI CCSGG 1 cut(s) 205
BsaHI GRCGYC 3 cut(s) 273, 288, 294
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 306, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 266
Bse118I RCCGGY 1 cut(s) 34
BseBI CCWGG 3 cut(s) 18, 256, 298
BseDI CCNNGG 2 cut(s) 306, 341
BseLI CCNNNNNNNGG 2 cut(s) 222, 266
BseMII CTCAG 2 cut(s) 36, 241
BsePI GCGCGC 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 117, 259
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 2 cut(s) 35, 205
BslI CCNNNNNNNGG 2 cut(s) 222, 266
BsmAI GTCTC 1 cut(s) 316
BsnI GGCC 2 cut(s) 117, 259
Bso31I GGTCTC 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 60, 349
Bsp143I GATC 4 cut(s) 42, 132, 183, 324
Bsp1720I GCTNAGC 2 cut(s) 22, 227
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 98, 250
BspANI GGCC 2 cut(s) 117, 259
BspCNI CTCAG 2 cut(s) 35, 240
BspFNI CGCG 1 cut(s) 237
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 118, 295
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 3 cut(s) 37, 140, 319
BspT107I GGYRCC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 316
BsrBI CCGCTC 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 306, 341
BssHII GCGCGC 1 cut(s) 235
BssMI GATC 4 cut(s) 42, 132, 183, 324
BssNI GRCGYC 3 cut(s) 273, 288, 294
BssT1I CCWWGG 2 cut(s) 306, 341
Bst2UI CCWGG 3 cut(s) 18, 256, 298
Bst6I CTCTTC 1 cut(s) 315
BstACI GRCGYC 3 cut(s) 273, 288, 294
BstC8I GCNNGC 3 cut(s) 56, 233, 237
BstDEI CTNAG 2 cut(s) 22, 227
BstDSI CCRYGG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 237
BstH2I RGCGCY 2 cut(s) 250, 297
BstHHI GCGC 4 cut(s) 237, 239, 249, 296
BstKTI GATC 4 cut(s) 45, 135, 186, 327
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 4 cut(s) 42, 132, 183, 324
BstMWI GCNNNNNNNGC 2 cut(s) 103, 232
BstNI CCWGG 3 cut(s) 18, 256, 298
BstSCI CCNGG 4 cut(s) 16, 203, 254, 296
BstUI CGCG 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 42, 324
BstYI RGATCY 2 cut(s) 42, 324
BsuRI GGCC 2 cut(s) 117, 259
BtgI CCRYGG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 315
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 3 cut(s) 56, 233, 237
CciI TCATGA 1 cut(s) 280
CfoI GCGC 4 cut(s) 237, 239, 249, 296
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 3 cut(s) 79, 116, 258
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 151
CviAII CATG 2 cut(s) 281, 307
CviJI RGCY 8 cut(s) 5, 21, 58, 117, 226, 259, 301, 347
CviKI_1 RGCY 8 cut(s) 5, 21, 58, 117, 226, 259, 301, 347
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 22, 227
DinI GGCGCC 1 cut(s) 295
DpnI GATC 4 cut(s) 44, 134, 185, 326
DpnII GATC 4 cut(s) 42, 132, 183, 324
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 2 cut(s) 306, 341
Eco24I GRGCYC 2 cut(s) 60, 349
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 3 cut(s) 16, 254, 296
EcoT14I CCWWGG 2 cut(s) 306, 341
EcoT38I GRGCYC 2 cut(s) 60, 349
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
ErhI CCWWGG 2 cut(s) 306, 341
FaeI CATG 2 cut(s) 284, 310
FaiI YATR 2 cut(s) 282, 308
FatI CATG 2 cut(s) 280, 306
Fnu4HI GCNGC 2 cut(s) 98, 250
FriOI GRGCYC 2 cut(s) 60, 349
Fsp4HI GCNGC 2 cut(s) 98, 250
FspBI CTAG 3 cut(s) 8, 222, 342
GlaI GCGC 4 cut(s) 236, 238, 248, 295
GluI GCNGC 2 cut(s) 98, 250
HaeII RGCGCY 2 cut(s) 250, 297
HaeIII GGCC 2 cut(s) 117, 259
HapII CCGG 2 cut(s) 35, 205
HgaI GACGC 1 cut(s) 281
HhaI GCGC 4 cut(s) 237, 239, 249, 296
Hin1I GRCGYC 3 cut(s) 273, 288, 294
Hin1II CATG 2 cut(s) 284, 310
Hin6I GCGC 4 cut(s) 235, 237, 247, 294
HinP1I GCGC 4 cut(s) 235, 237, 247, 294
HpaII CCGG 2 cut(s) 35, 205
HphI GGTGA 4 cut(s) 121, 154, 178, 295
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 3 cut(s) 136, 181, 281
Hpy99I CGWCG 7 cut(s) 65, 74, 125, 167, 245, 275, 293
HpyAV CCTTC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 232
HpyF3I CTNAG 2 cut(s) 22, 227
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 3 cut(s) 273, 288, 294
Hsp92II CATG 2 cut(s) 284, 310
HspAI GCGC 4 cut(s) 235, 237, 247, 294
KasI GGCGCC 1 cut(s) 293
Kzo9I GATC 4 cut(s) 42, 132, 183, 324
LmnI GCTCC 1 cut(s) 257
MaeI CTAG 3 cut(s) 8, 222, 342
MaeII ACGT 1 cut(s) 288
MalI GATC 4 cut(s) 44, 134, 185, 326
MbiI CCGCTC 1 cut(s) 252
MboI GATC 4 cut(s) 42, 132, 183, 324
MboII GAAGA 2 cut(s) 52, 332
MflI RGATCY 2 cut(s) 42, 324
MhlI GDGCHC 2 cut(s) 60, 349
MluCI AATT 2 cut(s) 155, 263
Mly113I GGCGCC 1 cut(s) 294
MnlI CCTC 8 cut(s) 58, 70, 92, 101, 160, 277, 338, 341
MspI CCGG 2 cut(s) 35, 205
MspR9I CCNGG 4 cut(s) 18, 205, 256, 298
MvaI CCWGG 3 cut(s) 18, 256, 298
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 103, 232
NarI GGCGCC 1 cut(s) 294
NciI CCSGG 1 cut(s) 205
NcoI CCATGG 1 cut(s) 306
NdeII GATC 4 cut(s) 42, 132, 183, 324
NlaIII CATG 2 cut(s) 284, 310
NlaIV GGNNCC 2 cut(s) 118, 295
PagI TCATGA 1 cut(s) 280
PaqCI CACCTGC 1 cut(s) 97
PauI GCGCGC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 273
PkrI GCNGC 2 cut(s) 99, 251
PluTI GGCGCC 1 cut(s) 297
PpuMI RGGWCCY 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 3 cut(s) 16, 254, 296
PspGI CCWGG 3 cut(s) 16, 254, 296
PspN4I GGNNCC 2 cut(s) 118, 295
PspPI GGNCC 3 cut(s) 79, 116, 258
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 2 cut(s) 42, 324
PteI GCGCGC 1 cut(s) 235
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SacI GAGCTC 1 cut(s) 60
SatI GCNGC 2 cut(s) 98, 250
Sau3AI GATC 4 cut(s) 42, 132, 183, 324
Sau96I GGNCC 3 cut(s) 79, 116, 258
ScrFI CCNGG 4 cut(s) 18, 205, 256, 298
SduI GDGCHC 2 cut(s) 60, 349
SetI ASST 6 cut(s) 60, 84, 111, 144, 180, 291
SfoI GGCGCC 1 cut(s) 295
SinI GGWCC 1 cut(s) 79
Sse9I AATT 2 cut(s) 155, 263
SsiI CCGC 2 cut(s) 98, 250
SspDI GGCGCC 1 cut(s) 293
SspMI CTAG 3 cut(s) 8, 222, 342
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 4 cut(s) 16, 203, 254, 296
StyI CCWWGG 2 cut(s) 306, 341
TaiI ACGT 1 cut(s) 291
TaqI TCGA 5 cut(s) 60, 84, 199, 243, 333
TasI AATT 2 cut(s) 155, 263
TatI WGTACW 1 cut(s) 150
TauI GCSGC 2 cut(s) 100, 252
TscAI CASTG 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 2 cut(s) 155, 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 341
XspI CTAG 3 cut(s) 8, 222, 342
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.