Rmu_co7963956.1_g000001

Plasminogen activator inhibitor 1 RNA-binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7963956.1
Physical Location & Seq
Reverse (-)
43 .. 485
443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7963956.1_g000001.1.cds

Sequence Viewer

Length: 348 bp
ctgacacaaataattatttttgtaaaatttagggagctagagcctggcactgaagttgagaaagatgttggtgctgagaagcagttgggagagaatggagctgctgatgccaccaaggagaatcctgtgggtgagccagaagagaaggagcctgaggagaaggagatgactctggaaaagtatgagaaggttctcgaagagaagagaaaggctctggctgcactgaagacagaggagagaaaggttgacttgcacaaagagttgaagtcaatgcagcagctctctcgcaagaagacaaatgatgaaatatttatcaagctggtgattaccttgcacttgtacttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.29

Weight (kDa)

5.24

Isoelectric Point (pI)

29.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031190)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co7963956.1_g000001 Rmu_sc0002180.1_g000017

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 346
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 2 cut(s) 72, 245
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 4 cut(s) 37, 101, 280, 319
AluI AGCT 4 cut(s) 37, 101, 280, 319
ApeKI GCWGC 4 cut(s) 101, 218, 274, 277
ApoI RAATTY 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 143, 334
AxyI CCTNAGG 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 233, 299
BbvI GCAGC 4 cut(s) 88, 205, 286, 289
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 1 cut(s) 45
BfaI CTAG 1 cut(s) 38
BisI GCNGC 4 cut(s) 102, 219, 275, 278
BlsI GCNGC 4 cut(s) 103, 220, 276, 279
Bme1390I CCNGG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 97
BpiI GAAGAC 2 cut(s) 233, 299
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BsaJI CCNNGG 1 cut(s) 114
Bse21I CCTNAGG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 66, 144
BseRI GAGGAG 2 cut(s) 170, 248
BseXI GCAGC 4 cut(s) 88, 205, 286, 289
BsgI GTGCAG 1 cut(s) 204
BspCNI CTCAG 2 cut(s) 67, 145
BspLI GGNNCC 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 45
Bst6I CTCTTC 3 cut(s) 135, 192, 197
BstDEI CTNAG 2 cut(s) 75, 153
BstMWI GCNNNNNNNGC 2 cut(s) 107, 218
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstV1I GCAGC 4 cut(s) 88, 205, 286, 289
BstV2I GAAGAC 2 cut(s) 233, 299
Bsu36I CCTNAGG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 48, 221
Csp6I GTAC 1 cut(s) 340
CviJI RGCY 9 cut(s) 37, 43, 101, 136, 151, 212, 218, 280, 319
CviKI_1 RGCY 9 cut(s) 37, 43, 101, 136, 151, 212, 218, 280, 319
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 75, 153
Eam1104I CTCTTC 3 cut(s) 135, 192, 197
EarI CTCTTC 3 cut(s) 135, 192, 197
Eco130I CCWWGG 1 cut(s) 114
Eco57I CTGAAG 2 cut(s) 72, 245
Eco81I CCTNAGG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaiI YATR 2 cut(s) 183, 346
FalI AAGNNNNNCTT 2 cut(s) 233, 265
Fnu4HI GCNGC 4 cut(s) 102, 219, 275, 278
Fsp4HI GCNGC 4 cut(s) 102, 219, 275, 278
FspBI CTAG 1 cut(s) 38
GluI GCNGC 4 cut(s) 102, 219, 275, 278
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 2 cut(s) 121, 169
HphI GGTGA 2 cut(s) 143, 334
Hpy166II GTNNAC 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 173, 194
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 3 cut(s) 139, 154, 181
HpyCH4V TGCA 4 cut(s) 221, 253, 274, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 218
HpyF3I CTNAG 2 cut(s) 75, 153
LmnI GCTCC 3 cut(s) 34, 98, 148
LpnPI CCDG 8 cut(s) 30, 57, 138, 150, 158, 165, 200, 305
Lsp1109I GCAGC 4 cut(s) 88, 205, 286, 289
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 38
MboII GAAGA 5 cut(s) 152, 209, 214, 238, 304
MluCI AATT 2 cut(s) 12, 26
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 2 cut(s) 148, 226
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 107, 218
NlaIV GGNNCC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 4 cut(s) 103, 220, 276, 279
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PsiI TTATAA 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SatI GCNGC 4 cut(s) 102, 219, 275, 278
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 45
SetI ASST 7 cut(s) 39, 103, 192, 246, 282, 321, 332
SfaNI GCATC 1 cut(s) 97
Sse9I AATT 2 cut(s) 12, 26
SspI AATATT 1 cut(s) 309
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 114
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 12, 26
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 121
TscAI CASTG 2 cut(s) 55, 228
TseI GCWGC 4 cut(s) 101, 218, 274, 277
TspDTI ATGAA 1 cut(s) 318
TspRI CASTG 2 cut(s) 55, 228
XapI RAATTY 1 cut(s) 26
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.