Rmu_sc0002180.1_g000017

Plasminogen activator inhibitor 1 RNA-binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002180.1
Physical Location & Seq
Reverse (-)
62126 .. 62674
549 bp
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UTR
Exon/CDS
Intron
Rmu_sc0002180.1_g000017.1.cds

Sequence Viewer

Length: 312 bp
atggcggagctagagcctggcactgaagttgagaaggatgttggtgctgagaagcagttgggagagaatggagctgctgatgccaccaaggagaatcctgtgggtgagccagaaaagaaggagcctgaggagaaggagatgactgtggaagagtatgagaaggttctcaaagagaagagaaaggctctggctgcactgaagactgaggagagaaaggttgacttggacaaagagttgaagtcaatgcagcagctctctagcaagaagacagatgatgaaatcttgcttatcagggctatgctgggatgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.55

Weight (kDa)

4.75

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031190)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co7963956.1_g000001 Rmu_sc0002180.1_g000017

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcuI CTGAAG 2 cut(s) 45, 218
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 3 cut(s) 10, 74, 253
AluI AGCT 3 cut(s) 10, 74, 253
ApeKI GCWGC 4 cut(s) 74, 191, 247, 250
AsuHPI GGTGA 1 cut(s) 116
AxyI CCTNAGG 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 206, 272
BbvI GCAGC 4 cut(s) 61, 178, 259, 262
BciT130I CCWGG 1 cut(s) 18
BfaI CTAG 2 cut(s) 11, 258
BisI GCNGC 4 cut(s) 75, 192, 248, 251
BlsI GCNGC 4 cut(s) 76, 193, 249, 252
Bme1390I CCNGG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 70
BpiI GAAGAC 2 cut(s) 206, 272
BplI GAGNNNNNCTC 2 cut(s) 169, 201
BsaJI CCNNGG 1 cut(s) 87
Bse21I CCTNAGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 2 cut(s) 43, 311
BseMII CTCAG 3 cut(s) 39, 117, 195
BseRI GAGGAG 2 cut(s) 143, 221
BseXI GCAGC 4 cut(s) 61, 178, 259, 262
BseYI CCCAGC 1 cut(s) 301
BsgI GTGCAG 1 cut(s) 177
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 40, 118, 196
BspLI GGNNCC 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 144, 170
BstDEI CTNAG 3 cut(s) 48, 126, 204
BstF5I GGATG 2 cut(s) 43, 311
BstMWI GCNNNNNNNGC 2 cut(s) 80, 191
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 4 cut(s) 61, 178, 259, 262
BstV2I GAAGAC 2 cut(s) 206, 272
Bsu36I CCTNAGG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 43, 311
BtsIMutI CAGTG 2 cut(s) 21, 194
CviJI RGCY 9 cut(s) 10, 16, 74, 109, 124, 185, 191, 253, 296
CviKI_1 RGCY 9 cut(s) 10, 16, 74, 109, 124, 185, 191, 253, 296
DdeI CTNAG 3 cut(s) 48, 126, 204
Eam1104I CTCTTC 2 cut(s) 144, 170
EarI CTCTTC 2 cut(s) 144, 170
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 45, 218
Eco81I CCTNAGG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaiI YATR 2 cut(s) 156, 299
FalI AAGNNNNNCTT 2 cut(s) 206, 238
Fnu4HI GCNGC 4 cut(s) 75, 192, 248, 251
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 4 cut(s) 75, 192, 248, 251
FspBI CTAG 2 cut(s) 11, 258
GluI GCNGC 4 cut(s) 75, 192, 248, 251
GsaI CCCAGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 1 cut(s) 94
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 4 cut(s) 28, 112, 127, 154
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 194, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 191
HpyF3I CTNAG 3 cut(s) 48, 126, 204
LmnI GCTCC 3 cut(s) 7, 71, 121
LpnPI CCDG 8 cut(s) 3, 30, 111, 123, 138, 173, 277, 287
Lsp1109I GCAGC 4 cut(s) 61, 178, 259, 262
LweI GCATC 1 cut(s) 70
MaeI CTAG 2 cut(s) 11, 258
MboII GAAGA 4 cut(s) 161, 187, 211, 277
MnlI CCTC 2 cut(s) 121, 199
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 80, 191
NlaIV GGNNCC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 4 cut(s) 76, 193, 249, 252
Psp6I CCWGG 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 301
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 123
SatI GCNGC 4 cut(s) 75, 192, 248, 251
ScrFI CCNGG 1 cut(s) 18
SetI ASST 5 cut(s) 12, 76, 165, 219, 255
SfaNI GCATC 1 cut(s) 70
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 11, 258
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 145
TfiI GAWTC 1 cut(s) 94
TscAI CASTG 2 cut(s) 28, 201
TseI GCWGC 4 cut(s) 74, 191, 247, 250
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 2 cut(s) 28, 201
XspI CTAG 2 cut(s) 11, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.