Rmu_co7965048.1_g000001

3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7965048.1
OG0031222
Physical Location & Seq
Reverse (-)
1 .. 396
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7965048.1_g000001.1.cds

Sequence Viewer

Length: 342 bp
atggcaaatcatgtaaccacatccttgaagcaacaccacttggacatgaatcctccatatgagcagggattgactaaagcatctaacttggctttcagttctttgccaacaatgcgcattgttgaatcccttgatgtgcaaagtcccgaaaatcaacgtttgctcccatctgatttgggtggaaagatgtctgcaaaatcttgttctgaaccagctgcctgtggagggtcacctggaatccttacaaacaagggttcccctcctcagcattttgagggctattctcaaagaaagtattttcctccacactggtccatggaggatgttaatgacgctctagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000175 GO:0000178 GO:0000278 GO:0000280 GO:0000287 GO:0000291 GO:0000819 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008285 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0019827 GO:0022402 GO:0022613 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0042127 GO:0042254 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051276 GO:0051304 GO:0051306 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098727 GO:0098813 GO:0140014 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903047 GO:1905354 GO:1990074 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RNB

Protein Analysis

114

Amino Acids

12.47

Weight (kDa)

5.91

Isoelectric Point (pI)

66.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031222)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co7965048.1_g000001 Rmu_sc0002684.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 116
AclI AACGTT 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 2 cut(s) 28, 125
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 222
AvaII GGWCC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 338
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 2 cut(s) 20, 328
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 202
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 129
Bsp19I CCATGG 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 228
BstF5I GGATG 2 cut(s) 20, 328
BstHHI GCGC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 234
BstPI GGTNACC 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 20, 328
BtsIMutI CAGTG 1 cut(s) 307
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 312
CviAII CATG 3 cut(s) 11, 46, 316
CviJI RGCY 3 cut(s) 92, 215, 279
CviKI_1 RGCY 3 cut(s) 92, 215, 279
DdeI CTNAG 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 312
Eco91I GGTNACC 1 cut(s) 228
EcoO65I GGTNACC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 3 cut(s) 14, 49, 319
FaiI YATR 5 cut(s) 12, 47, 58, 60, 317
FaqI GGGAC 1 cut(s) 129
FatI CATG 3 cut(s) 10, 45, 315
FauNDI CATATG 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 7, 335
Fsp4HI GCNGC 1 cut(s) 216
FspAI RTGCGCAY 1 cut(s) 116
FspBI CTAG 1 cut(s) 338
FspI TGCGCA 1 cut(s) 116
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 216
HhaI GCGC 1 cut(s) 117
Hin1II CATG 3 cut(s) 14, 49, 319
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 3 cut(s) 49, 125, 237
HphI GGTGA 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 172, 208
Hpy188III TCNNGA 2 cut(s) 146, 338
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 2 cut(s) 139, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 3 cut(s) 14, 49, 319
HspAI GCGC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 6 cut(s) 50, 219, 225, 232, 246, 295
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 2 cut(s) 13, 228
MnlI CCTC 7 cut(s) 63, 218, 268, 270, 273, 312, 313
MseI TTAA 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 315
NdeI CATATG 1 cut(s) 58
NlaIII CATG 3 cut(s) 14, 49, 319
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 228
NsbI TGCGCA 1 cut(s) 116
PfeI GAWTC 3 cut(s) 49, 125, 237
PkrI GCNGC 1 cut(s) 217
Psp1406I AACGTT 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 232
PspEI GGTNACC 1 cut(s) 228
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 312
PvuII CAGCTG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 216
Sau96I GGNCC 1 cut(s) 312
ScrFI CCNGG 1 cut(s) 234
SetI ASST 3 cut(s) 160, 217, 235
SfaNI GCATC 1 cut(s) 89
SinI GGWCC 1 cut(s) 312
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 315
TaiI ACGT 1 cut(s) 160
TfiI GAWTC 3 cut(s) 49, 125, 237
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 314
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 62
TspRI CASTG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 312
XbaI TCTAGA 1 cut(s) 337
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.